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Report for CCDS40057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40057.1 Public Mus musculus 7 Or51ah3 23 108 98 CCDS HistoryNCBI Gene:259084Re-query CCDS DB by CCDS ID:40057.1Re-query CCDS DB by GeneID:259084See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098198.2 ENSMUSP00000095800.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098198.2Link to Ensembl Protein Viewer:ENSMUSP00000095800.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098198Re-query CCDS DB by Protein ID:ENSMUSP00000095800
Original member Current member EBI ENSMUST00000214345.1 ENSMUSP00000148872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214345.1Link to Ensembl Protein Viewer:ENSMUSP00000148872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214345Re-query CCDS DB by Protein ID:ENSMUSP00000148872
Original member Current member EBI ENSMUST00000215673.1 ENSMUSP00000150166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215673.1Link to Ensembl Protein Viewer:ENSMUSP00000150166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215673Re-query CCDS DB by Protein ID:ENSMUSP00000150166
Original member Current member NCBI NM_147080.2 NP_667291.1 Accepted alive Link to Nucleotide Sequence:NM_147080.2Link to Protein Sequence:NP_667291.1Re-query CCDS DB by Nucleotide ID:NM_147080Re-query CCDS DB by Protein ID:NP_667291Link to BLAST:NP_667291.1

Chromosomal Locations for CCDS 40057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103560479 103561420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTCTGAATTTAATACCACATTTCAACCTTCTGTCTTCATCCTCACTGGCCTCAGAGGGCTGGTGGGTG
CCCGCCTGTGGCTGGGACCACTCCTGAGCCTGATGTACATCACCACATTGGCAGGGAACTGTACTGTAAT
TTATTTAGTAAGGACTGAAAGGAGTCTGCAGGAGCCTCAGTACCAATTTTTGTCTATGCTGGCTGGGGCT
GACATTGTCTTGTCTGTCTCTACACTGTTCTCTGTGCTAAAAGTCTTTATCTTTGACCTCTATGAAATTG
CATTTGACAGTTGCCTTGCTCAGCTCTTCTTCATCCATACATCTTCTTCCATGGGTTCAGGAATCTTGTT
AGCTATGGCTTTTGACCGCTTTGTGGCCATCAGTCACCCCCTGCAATATACAACAATACTGACGAACTCA
CGAGTCACCAGGATGGGACTGGCAGCTTTTCTGAGGGGTGTAGCGCTCATGATGCCCTTGCCTATACTGC
TTAAGAGATTACCATTCTGCAAGGGGCAGCTGTTGTCCTACTCCTACTGTATCCACCCAAATGTCATGAA
ACTAGCCTGTGGCCAAGTCAAGATCAATATTTTCTATGGTCTTGTTTTGGTTATATTTTCGTTTGGGGTG
GACTTTTTGCTCATAGCTATTTCTTATGCTCTGATATTTCAAGCAGTTATGGGGATCGCTTCTAGAGAAG
GTCAGATGAAAGCGCTCAATACTTGTTTGTCTCATATCTTTATTGTCTTTATCTACTATGGCCCTTTGCT
GGCAATAACTGTAATGCATCGGATCAGCCGCAGAAGTTCTCCAATAGCACATGCAGTCCTGGGAAATATC
TATCTTTTTATGCCCCCAATGCTTAACCCAATTGTGTATAGCCTGAAGACCAAGCAGATTCGCTCTGCCT
TGAGAAAATCTTTGAAGATCCAGAGGAGATGA

Translation (313 aa):
MSEFNTTFQPSVFILTGLRGLVGARLWLGPLLSLMYITTLAGNCTVIYLVRTERSLQEPQYQFLSMLAGA
DIVLSVSTLFSVLKVFIFDLYEIAFDSCLAQLFFIHTSSSMGSGILLAMAFDRFVAISHPLQYTTILTNS
RVTRMGLAAFLRGVALMMPLPILLKRLPFCKGQLLSYSYCIHPNVMKLACGQVKINIFYGLVLVIFSFGV
DFLLIAISYALIFQAVMGIASREGQMKALNTCLSHIFIVFIYYGPLLAITVMHRISRRSSPIAHAVLGNI
YLFMPPMLNPIVYSLKTKQIRSALRKSLKIQRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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