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Report for CCDS53051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53051.1 Public Mus musculus X Septin6 23 108 98 CCDS HistoryNCBI Gene:56526Re-query CCDS DB by CCDS ID:53051.1Re-query CCDS DB by GeneID:56526See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115239.9 ENSMUSP00000110894.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115239.9Link to Ensembl Protein Viewer:ENSMUSP00000110894.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115239Re-query CCDS DB by Protein ID:ENSMUSP00000110894
Original member Current member NCBI NM_001177324.1 NP_001170795.1 Accepted alive Link to Nucleotide Sequence:NM_001177324.1Link to Protein Sequence:NP_001170795.1Re-query CCDS DB by Nucleotide ID:NM_001177324Re-query CCDS DB by Protein ID:NP_001170795Link to BLAST:NP_001170795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170795.1 434 Q9R1T4-1 434 100% 0 0

Chromosomal Locations for CCDS 53051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36915323 36915347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36922840 36923030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36926782 36926914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36930099 36930267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36934384 36934480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36942055 36942216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36946568 36946754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36966596 36966791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36975063 36975177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36989379 36989408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGCAGCGGCCGATATAGCTCGCCAGGTGGGCGAAGATTGTCGAACTGTCCCCCTGGCTGGACATGTGG
GGTTCGACAGCTTGCCTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTG
CGTGGGGGAGACAGGTTTGGGCAAGTCCACGCTCATGGATACCCTGTTTAACACCAAGTTTGAAGGGGAG
CCAGCGACCCACACACAGCCAGGGGTTCAGCTCCAGTCCAATACCTACGACCTCCAGGAGAGCAACGTGG
GGTTGAAACTCACAATTGTGAGCACTGTAGGCTTTGGGGATCAGATCAACAAGGAGGACAGCTACAAGCC
CATCGTGGAATTCATTGATGCTCAGTTTGAGGCCTACCTACAAGAGGAGCTGAAGATCCGAAGAGTACTG
CACTCCTACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCGACAGGACATTCGCTTAAGT
CTCTGGACCTAGTGACCATGAAGAAGCTGGATAGTAAGGTGAACATCATTCCCGTTATTGCCAAGTCAGA
TGCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATCAAAATCACCAGCGAACTTGTGAGCAATGGAGTC
CAGATCTATCAGTTCCCCACAGACGATGAGTCGGTGAGCGAGATCAATGGAACCATGAATGCCCACCTGC
CGTTTGCTGTTGTTGGCAGCACAGAAGAAGTGAAGATAGGCAACAAGATGATGCGGGCTCGGCAGTATCC
TTGGGGGACTGTGCAGGTTGAAAACGAGGCTCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGG
GTCAACATGGAGGATCTGCGGGAGCAGACCCACGCCCGGCACTATGAATTGTACCGCCGCTGTAAGCTGG
AGGAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTGCAGGAGACATATGAGGCAAA
GAGAAATGAGTTCCTTGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGGCAGATGTTTGTCCAGAGAGTC
AAAGAGAAAGAAGCGGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAATTTGACCGTCTGAAGAAAC
TGCACCAGGAAGAGAAGAAGAAGCTGGAGGATAAGAAGAAATGTCTGGATGAGGAAATGAACGCCTTCAA
GCAGAGAAAGGCGGCAGCTGAGCTGCTCCAGTCTCAGGGCTCTCAGGCTGGGGGCTCACAGACTCTGAAA
AGGGACAAAGAGAAGAAGAATAACCCATGGCTGTGTATTGAATAG

Translation (434 aa):
MAAADIARQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE
PATHTQPGVQLQSNTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVL
HSYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPVIAKSDAISKSELAKFKIKITSELVSNGV
QIYQFPTDDESVSEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIR
VNMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRV
KEKEAELKEAEKELHEKFDRLKKLHQEEKKKLEDKKKCLDEEMNAFKQRKAAAELLQSQGSQAGGSQTLK
RDKEKKNNPWLCIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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