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Report for CCDS13757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13757.1 Public Homo sapiens 22 GSC2 24 110 108 CCDS HistoryNCBI Gene:2928Re-query CCDS DB by CCDS ID:13757.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13757.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000086933.3 ENSP00000086933.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000086933.3Link to Ensembl Protein Viewer:ENSP00000086933.2Re-query CCDS DB by Nucleotide ID:ENST00000086933Re-query CCDS DB by Protein ID:ENSP00000086933
Original member Current member NCBI NM_005315.2 NP_005306.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005315.2Link to Protein Sequence:NP_005306.1Re-query CCDS DB by Nucleotide ID:NM_005315Re-query CCDS DB by Protein ID:NP_005306Link to BLAST:NP_005306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005306.1 205 O15499 205 100% 0 0

Chromosomal Locations for CCDS 13757.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 19148991 19149095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19149663 19149916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 19150025 19150283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCGGCAGCGGCTGGGGGCGCGGCGAGCCGCCGGGGTGCCGGGCGGCCCTGCCCCTTCTCCATCGAGC
ACATCCTCTCCAGCCTGCCCGAGCGGAGCCTCCCGGCCCGGGCCGCCTGCCCACCGCAGCCCGCCGGTCG
CCAGAGCCCCGCGAAGCCAGAGGAGCCCGGGGCGCCCGAGGCTGCGCCCTGCGCCTGCTGCTGCTGCTGC
GGCCCCCGCGCGGCGCCCTGCGGGCCCCCAGAGGCGGCCGCCGGGCTGGGCGCTCGTCTGGCGTGGCCGC
TGAGGCTGGGACCGGCGGTGCCCTTGTCTCTGGGTGCGCCAGCCGGAGGTTCCGGGGCGCTCCCGGGCGC
GGTCGGCCCGGGTTCGCAGCGGCGCACGAGGCGCCACCGCACCATCTTCAGCGAAGAGCAGCTGCAGGCG
CTCGAGGCGCTTTTCGTGCAGAACCAGTATCCTGACGTGAGTACGCGCGAGCGCCTGGCCGGCCGCATCC
GCCTTCGCGAGGAGCGCGTGGAGGTCTGGTTCAAGAACCGCCGGGCCAAATGGCGACACCAGAAGCGCGC
GTCGGCTTCCGCGAGGCTCCTGCCCGGCGTCAAGAAGTCCCCGAAGGGGAGCTGCTGA

Translation (205 aa):
MAAAAGGAASRRGAGRPCPFSIEHILSSLPERSLPARAACPPQPAGRQSPAKPEEPGAPEAAPCACCCCC
GPRAAPCGPPEAAAGLGARLAWPLRLGPAVPLSLGAPAGGSGALPGAVGPGSQRRTRRHRTIFSEEQLQA
LEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASARLLPGVKKSPKGSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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