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Report for CCDS28525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28525.1 Public Mus musculus 17 Mslnl 23 108 98 CCDS HistoryNCBI Gene:328783Re-query CCDS DB by CCDS ID:28525.1Re-query CCDS DB by GeneID:328783See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28525.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047098.6 ENSMUSP00000049020.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047098.6Link to Ensembl Protein Viewer:ENSMUSP00000049020.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047098Re-query CCDS DB by Protein ID:ENSMUSP00000049020
Original member Current member NCBI NM_177822.3 NP_808490.1 Accepted alive Link to Nucleotide Sequence:NM_177822.3Link to Protein Sequence:NP_808490.1Re-query CCDS DB by Nucleotide ID:NM_177822Re-query CCDS DB by Protein ID:NP_808490Link to BLAST:NP_808490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808490.1 685 Q8C160 685 100% 0 0

Chromosomal Locations for CCDS 28525.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25736921 25736963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25737785 25737905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25738949 25739069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25742657 25742742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25742924 25743050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25743128 25743318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25743672 25743762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25743960 25744101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25744464 25744651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25744723 25744878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25744965 25745092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25746056 25746186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25746306 25746400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25746774 25747023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25747893 25748080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGAGCAGAACTCTCCGACCGTCAGCTATGGGTTCCAGAGTGGGTGCCCTGGCAAGTCCTGGTCTCGCCC
TCCTCCTGTCCCTCACCGCCCACTGCTCGGGTCCTCAGGCTAAAGGCTTGCCCAAGGGAGGACTGAATGC
AAGTGAAGCCAACACATGGGTCAGGAACAACACCTCCCTCCTGCAAAACTTCTGGTGCTTGCCAGCCAGC
CAGCTGCCCCGAGAACAGCTCTCCAGTTTAATCAGAAGCCTGGCTTCACAGAGGGTTGCACTCAAAGCCT
GGCAGCTCAGCTGCTTGGCCAACCTCGCTGCACAGCTGGGTCTCCAGGATGACTTCGAATTCCACCCACC
CAACCTTCTACTTTTCTACGATCTGAGCCAGGTGGGGGACACTAACTGCCGGGCCTTCATTCACCATGCT
GCCCAAGGGGACACAGAACTGCTCACCAACTTGCCCAACCAGAGAGTTGCCCTGCAGCGCACAGCCTTGG
CCTGTCTGGGCGGACCCCACCTACAGCTCAGTGCTTCAGACCTGTGGCTTCTTGGGGTCCTGGTGTGTGA
CATGGAGGCAGCACAAATTGTGACTGCAGACCCCAGTGTGCTGAGGAACCTGCTTCGCTGCCCAAGGCTT
ACTGTCATGCAGACTGCGGCCCTTAACACCCTGCTGGCCAGTGGGAAGACGCAAATCGGGCCTCCTGGCT
CCTGGAACCTGCAGGGGCTACAGGCCCTCGGACTTCTGGCCACTTACATCAGCCCCCACCTGTGGGAGAA
GGTGCAGGAGGCTGTGGGCTTGGACTTCTTCCGCAGTGTGGTGGCTGCTTGCCGGGCAGGCCAACTGAGC
AGGCACGATGCCAGACGCTTCGTTGACAACTTCCTAGAGTCCAAGGCCACTTCAGTGTCCTCAAGGCCCA
AGCGGCGCACAGGGAGATCCTGTGTCCGTGGCAACATCACAGCAGCCACCCTGCACGATGACCTCTTCCT
GGTGCACTATGACTGCACCCAGCTGGAATCCTGCCTAGGCACACGCGTGCTCAGGGCCAACCTGGACCCC
TTGCTCCAACACCCGCTGCCTGCAGAGTGCCAGCGCGTTGTCAAAGCCAAGCTTACTCAGATTTACCCAC
ATGGCATCCCTGAGGACCAGCTGCACCTCATCCCCTCGCTGGTCTACCTCTACTCCCTCGCTGAAATAGG
CCAGTGGAACATCACATCCGGGGACACAGTGATGATCCTGCTGGCCTCAGATGCGGCTCTGGACAACCAG
ACGGAGGCAGTTCTACAGAGGTTCTTGGACCACAATGGCAAGGTCACTGGAGCTCTTCTGGTGGCCATCG
GGGGTTCCCGTCTCTGCTGGATGAGCCTCAAGCAGCTTCAGTTTATCCAGCCCTCAGAGTTCCGGCTGGC
CGGAGCTCCAGACATCTCTCCCTGCCCCCAGAGTCGGAAGGATGCGCTCTTTGTCAAGGCTCATGAGGTC
TTTAGGAACACCAGTAATGTGGGAGAATATTACTACTTAATCCGCCCCTACCTCGGTGGTGCCCCTTTGG
AGGAACTTCAATACCTGGCACAGGCCAACATCTCCATGGACATTGACACGTTCACCAACCTCAACCCCCT
GACACTGAAGAGCATGGGAGTGGACAGTGTGAGGAATCTGCTGGGCCAGAACCTGGGAGATCTGCGGAAG
GCCCGCAACCACCCAAATGTCATCCTGTGGATGCACAGCCACAACATGACAGACCTGTCTGATATGGGCC
TATACACCAGCCCCACACAGGCCTATGTGGCCAACAGGCCCCCCAACACTGCCTACCCACCATCCAGTTT
GATCCACTCCTTGGATCCGCCAGGCAATGATGGGGTTTCCCACACCTCAGGAAGTCCTCCAGTTCATCTG
GGGTACCTGTCACTCGCTGTGGCTCTGCCTTCCAGCCTTCTGTGGCTGCTACTGTGTCAGTTACCTTCGG
GACAAATGGCCACTGCTCACAGGACACTAGGGCCAATGGCACTGGCCCAGGGCAGTTGGACCCCTGAACA
TCAGATTCCAGAGAAACGGAGCTGCTAG

Translation (685 aa):
MSRTLRPSAMGSRVGALASPGLALLLSLTAHCSGPQAKGLPKGGLNASEANTWVRNNTSLLQNFWCLPAS
QLPREQLSSLIRSLASQRVALKAWQLSCLANLAAQLGLQDDFEFHPPNLLLFYDLSQVGDTNCRAFIHHA
AQGDTELLTNLPNQRVALQRTALACLGGPHLQLSASDLWLLGVLVCDMEAAQIVTADPSVLRNLLRCPRL
TVMQTAALNTLLASGKTQIGPPGSWNLQGLQALGLLATYISPHLWEKVQEAVGLDFFRSVVAACRAGQLS
RHDARRFVDNFLESKATSVSSRPKRRTGRSCVRGNITAATLHDDLFLVHYDCTQLESCLGTRVLRANLDP
LLQHPLPAECQRVVKAKLTQIYPHGIPEDQLHLIPSLVYLYSLAEIGQWNITSGDTVMILLASDAALDNQ
TEAVLQRFLDHNGKVTGALLVAIGGSRLCWMSLKQLQFIQPSEFRLAGAPDISPCPQSRKDALFVKAHEV
FRNTSNVGEYYYLIRPYLGGAPLEELQYLAQANISMDIDTFTNLNPLTLKSMGVDSVRNLLGQNLGDLRK
ARNHPNVILWMHSHNMTDLSDMGLYTSPTQAYVANRPPNTAYPPSSLIHSLDPPGNDGVSHTSGSPPVHL
GYLSLAVALPSSLLWLLLCQLPSGQMATAHRTLGPMALAQGSWTPEHQIPEKRSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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