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Report for CCDS40459.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40459.1 Public Mus musculus 8 Kctd19 23 108 98 CCDS HistoryNCBI Gene:279499Re-query CCDS DB by CCDS ID:40459.1Re-query CCDS DB by GeneID:279499See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40459.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063071.12 ENSMUSP00000050687.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063071.12Link to Ensembl Protein Viewer:ENSMUSP00000050687.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000063071Re-query CCDS DB by Protein ID:ENSMUSP00000050687
Original member Current member NCBI NM_177791.3 NP_808459.1 Accepted alive Link to Nucleotide Sequence:NM_177791.3Link to Protein Sequence:NP_808459.1Re-query CCDS DB by Nucleotide ID:NM_177791Re-query CCDS DB by Protein ID:NP_808459Link to BLAST:NP_808459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808459.1 950 Q562E2-2 950 100% 0 0

Chromosomal Locations for CCDS 40459.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105382956 105383069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105384731 105384832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105385023 105385177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105385330 105385521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105386750 105387377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105387766 105387880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105388191 105388274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105388465 105388607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105389044 105389147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105390280 105390440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105391873 105392083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105393563 105393631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105393826 105393957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105395271 105395462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105396330 105396480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105408328 105408624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105413454 105413456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGGAGGAGCCTGGCGGGCTCCATGAGTCAGCAGAGGATTTGTTTCACTTCAATGTCGGGGGCTGGCATT
TCTCAGTTCCCAGGAGCAAACTTGCTCAGTTCCCAGACTCGCTGTTGTGGAAAGAGGCTTCAGCCCTGAC
CTCTTCAGAGAACCAGCGGCTCTTCATTGACAGAGACGGCTCCACGTTTAGGCATGTGCACTATTACCTC
TACACGTCCAAGCTCTCCTTCTCCAGTTGTGCAGAACTGAACTTGCTCTATGAGCAAGCCCTGGGTTTGC
AGCTGATGCCCTTGCTTCAGACCCTAGATAACCTGAAGGAAGGGAGACACCACCTCCGTGTGCGGCCTGC
CGACATTCCTGTGGCTGAGAGAGCATCCCTGAACTACTGGCGGACATGGAAGTGTATCAGCAAGCCCTCG
GATTTTCCAATAAAAAGCCCCGCCTTCACAGGTCTTCATGACAAGGCCCCTTTGGGACTCATGGACACAC
CGCTGTTGGACACAGAAGAGGAAGTGCACTACTGCTTCTTACCCCTCGACTTGGTGGCCAAGTACCCAAG
CCTAGTGACCGAAGACAATCTGCTGTGGCTGGCTGAAACGGTGGCCCTGATCGAGTGCGAATGCAGCGAG
TTCCGCTTCATTGTGAATTTTCTACGCTCACACAAGATTTTACTACCAGATAACTTCTCCAACATAGATG
TGTTAGAAGCAGAAGTAGAAATTCTGGAAATCCCTGAGCTTACAGAAGCTGTACGGTTGTACCGGATGAA
TATGGCGTTGCAACCAGCGTTGCCAGGGCCGAAGGGAAGCCAGCTTAGCCTGGAGCAGGAGGAGCCTAGC
CTGGGTGGCTGTTCCCGGACCTCCTGCCCACCTCTAAGTCCTGGAAAGGGGGGTCGTACAGCCAGTGTGG
AGTCTGTGAAACCACTGTACTTGATGGCCCTGGGCCTGCTGGTCAAGTATCCAGACTCTGCACTGGGACA
GCTGCGCATCGAGAGCACGCTGGACGGAAGCAGACTATACATCACAGGGAACGGGGCCCTTTTCCAGCAC
GTCAGGAACTGGCTGGGCACTTGTCGGCTGCCCCTGACTGAGACCATCTCCGAGGTGTATGAGCTCTGCG
CCTTCCTGGACAAGAGGGACATCACCTACGAGCCAATGAAAGTGGCTCTGAAGACTCATCTGGAGCCAAG
GACTTTGCTGCCCGTGGATGTGCTCAGTGAGGAGTGGACAGCTGAGGTCACGATATACTCACCACAGCAG
ATCATCAAGCTTTATGTTGGAAGCCATTGGTATGCAACGACCCTGCAGACCCTGATGAAGTACCCAGAAC
TGCTATCCAACACTCAGAGAGTGTACTGGATCGCCTACGGACAGACCTTGCTCATTCACGGGGACGGCCA
AATGTTCCGACACATTCTCAACTTCCTGAGACTTGGAAAACTGTTTTTACCATCAGAATTTAAGGAATGG
CCTCTCTTCTGCCAGGAGGTGGAGGAGTATCATATTCCAGCCCTCTCAGAAGCCCTGGCACAATGCGAAG
CATACAAGTCATGGACTCAGGAGAAAGAATCTGAAAATGAAGAAGCTTTTCCCATTAGGAAGCTGCATGT
GGTGACCGAAGGGACAGGGCCAATGGCAGAGTTCAGCAGAGATGCCAAGGAAACCACAGCCTGCATGCCT
GTGGACTTCCAGGAATGCAGTGACAGGACTCCATGGAACAAGGCCAAAGGGAACCTGACCAGGTCCAGCC
AGATGGAAGAGGCTGAGCAGTATACCCGGACTATTCAGGTCTCCCTCTGCAGAAATGCCAAGAGGGGAGG
CAATCCCAGCACATACTCACACTGCTCTGGTTTATGTGCCAACCCCAGACATTGGGGAGGTCACTCTGAG
AGTCCCCCCAAGAAGAAGTGCACCACTATAAACCTCACACAGAAACCTGATGCCAAAGACCCTCCTGTCA
CCCCCATGCAAAAACTCATATCTTTAGTCAGGGAATGGGACATGGTCAACTGTAAACAGTGGGAATTCCA
GCCACTGCCAGCCTCCAGGAGCAGCTCTGTGGAGGAGGCTAGCCTGCATGTCCCCTCGGGAAGTGAGGCT
GCTCCGCAGCCTGGTACCTCAGCTGCTTGGAAAGCTCATTCCATAACCTCTGAGAAGGATGCTGGTCCCC
AGACTGGACCCGGAGCTGGAGTGAAAGACAAGGGTCCAGAGCCAACCTTTAAGCCATACTTCCCTACAAA
AAGAGCTATTACCCTAAAGGACTGGGGCAAGCAGAGGCCCAAGGACAGAGAAAGCCCTGCTCCTGAGCAG
CCTCTGCCTAATGCTAACGGGACCGACAATCCAGGGGCCATCCTCAAAGTGGCTCACCCCCCTGTGGTGG
GTAATGATGGCTCCTGCATGTTCTTTGAAGACAGCATTATCTACACCACCCAAATGGATAACATCAAGCA
TACATCACTCACAGCCAGCCCCCAACTTCGAGAAGTGACTTTTCTGAGCTTCTCTCTGTCCTGGGAGGAG
ATGTTTTATGCACAGAAATGTCACCGCTTCCTGACCGACATCATCTTGGATTCCATCAGGCAAAAGGATC
CCAAAGCTATCACAGCCAAGGTGGTGTCTCTGGCCTACCGACTGTGGACACTGAACATCAGCCCCAAGCA
GTTCGTGGTGGATCTGCTGGCCATCGCTGGCTTCAAGGATGACCGGCACACTCAGGAGCGTCTGTACAGT
TGGGTAGAGCTCACACTGCCTTTCGCCAGAAAATATGGCCGTTGCGTGGACCTGCTCATCCAGAGGGGAC
TGTCCAGGTCTGTCTCTTATTCAGTCCTGGGCAAGTATTTACACGAGGGCTAG

Translation (950 aa):
MEEPGGLHESAEDLFHFNVGGWHFSVPRSKLAQFPDSLLWKEASALTSSENQRLFIDRDGSTFRHVHYYL
YTSKLSFSSCAELNLLYEQALGLQLMPLLQTLDNLKEGRHHLRVRPADIPVAERASLNYWRTWKCISKPS
DFPIKSPAFTGLHDKAPLGLMDTPLLDTEEEVHYCFLPLDLVAKYPSLVTEDNLLWLAETVALIECECSE
FRFIVNFLRSHKILLPDNFSNIDVLEAEVEILEIPELTEAVRLYRMNMALQPALPGPKGSQLSLEQEEPS
LGGCSRTSCPPLSPGKGGRTASVESVKPLYLMALGLLVKYPDSALGQLRIESTLDGSRLYITGNGALFQH
VRNWLGTCRLPLTETISEVYELCAFLDKRDITYEPMKVALKTHLEPRTLLPVDVLSEEWTAEVTIYSPQQ
IIKLYVGSHWYATTLQTLMKYPELLSNTQRVYWIAYGQTLLIHGDGQMFRHILNFLRLGKLFLPSEFKEW
PLFCQEVEEYHIPALSEALAQCEAYKSWTQEKESENEEAFPIRKLHVVTEGTGPMAEFSRDAKETTACMP
VDFQECSDRTPWNKAKGNLTRSSQMEEAEQYTRTIQVSLCRNAKRGGNPSTYSHCSGLCANPRHWGGHSE
SPPKKKCTTINLTQKPDAKDPPVTPMQKLISLVREWDMVNCKQWEFQPLPASRSSSVEEASLHVPSGSEA
APQPGTSAAWKAHSITSEKDAGPQTGPGAGVKDKGPEPTFKPYFPTKRAITLKDWGKQRPKDRESPAPEQ
PLPNANGTDNPGAILKVAHPPVVGNDGSCMFFEDSIIYTTQMDNIKHTSLTASPQLREVTFLSFSLSWEE
MFYAQKCHRFLTDIILDSIRQKDPKAITAKVVSLAYRLWTLNISPKQFVVDLLAIAGFKDDRHTQERLYS
WVELTLPFARKYGRCVDLLIQRGLSRSVSYSVLGKYLHEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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