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Report for CCDS18082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18082.1 Public Mus musculus 4 Spata31f3 23 108 98 CCDS HistoryNCBI Gene:277773Re-query CCDS DB by CCDS ID:18082.1Re-query CCDS DB by GeneID:277773See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055944.10 ENSMUSP00000060318.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055944.10Link to Ensembl Protein Viewer:ENSMUSP00000060318.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055944Re-query CCDS DB by Protein ID:ENSMUSP00000060318
Original member NCBI NM_177785.5 NP_808453.1 Updated not alive Link to Nucleotide Sequence:NM_177785.5Link to Protein Sequence:NP_808453.1Re-query CCDS DB by Nucleotide ID:NM_177785Re-query CCDS DB by Protein ID:NP_808453
Current member NCBI NM_177785.6 NP_808453.1 Accepted alive Link to Nucleotide Sequence:NM_177785.6Link to Protein Sequence:NP_808453.1Re-query CCDS DB by Nucleotide ID:NM_177785Re-query CCDS DB by Protein ID:NP_808453Link to BLAST:NP_808453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808453.1 370 Q80YD3-2 370 100% 0 0

Chromosomal Locations for CCDS 18082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 42868509 42868747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42871500 42872119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42873036 42873099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42873494 42873539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 42874023 42874166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGATGGTCCCTTCTTTTATTCTGTGGGATGTGGGATCCTCGGTATATACATATGGATCTCTCTTCATTA
TTGCATTGATTATTTGGCATGTGAGAAGGAGCCACCGAGGATTAAGGTTGGGACCTATCAAGAGCTGTAC
CAAGTGTTTCCGAAGAATCAAGCAAAAGCCTAGTGATAGAACGCTAAGAGTTAAGAAGAGGACAACCAAG
GAAGAAACTGAGAAACTGCAGAAGCTGCTCTCTAACATGAAAAGACAGGGCTGGCTCCCTCAAGAAGGAA
GTGTGCGACGACTCCTGTGCTCAGATCCATCCTGCCCCATCTGCAATGCCATGGCTCTGGAAATTCAGCA
GTTGCTGGGGGTTGAGAACAAAAAGACCTCTTCCAGTCTACTGAGGCACTCCCGCAGCTTTTCTTGTCTG
GAGGCATTGTCTCCACCCAAAGTGTTGAATGACCAGAGTTCAGAGCTCTCCAAAGTGTTGAATGGCCAGA
GTTCAGAGCTCTCCAAAGTGTTGAATGGCCAGAGTTCAGAGCTCTCCAAAGTGTTGAATGACCAGAGTTC
AGAGCTCTCCAAAGTGTTGAATGACCAGAGTTCAGAGCTCAGTTCCCAACACTCCAAAGACATTTCATTG
CCACCCAAGTTCATGCAGTCACAATCAACAGATCAGAAATTGACTCTGTCAGCTCCTCTGTCCACTGGCA
ACACTGTCCTCCAGTGTTACCACCCTGCTCCTCAGCAACAGCCGGAACCTCAAGGGTCAAATGCGTTCCA
GGATGTAAGCGGTCTGTCATCTTCAAGTATGGACGAGCATGGGGTGCCTGCAAACCAACAAAAGAAGAGG
AAGAAAACCAAGAAACTTGTCTCGAAGAACCAAGCGCCCTCAGAAGCTGAAATGGAAAACAAGATGACGT
TCTTTTCTCACTGGGTTAACCCTGAAGTGAAATGCGACAGACCGGAGGAATCCTTTGCCTTCTATAAGTC
TGAGACAGGGGCCAAACCCAAGACTGGAGAGCCCAAGAAGAGTTCTGCCAAAGTCCGAGCAGAGGAACCC
AACCTGGAGAAACATGCAAAAGATCTCAAAGCCAAGCCTCTCCATGCTAAGAGGAACATTTGA

Translation (370 aa):
MMVPSFILWDVGSSVYTYGSLFIIALIIWHVRRSHRGLRLGPIKSCTKCFRRIKQKPSDRTLRVKKRTTK
EETEKLQKLLSNMKRQGWLPQEGSVRRLLCSDPSCPICNAMALEIQQLLGVENKKTSSSLLRHSRSFSCL
EALSPPKVLNDQSSELSKVLNGQSSELSKVLNGQSSELSKVLNDQSSELSKVLNDQSSELSSQHSKDISL
PPKFMQSQSTDQKLTLSAPLSTGNTVLQCYHPAPQQQPEPQGSNAFQDVSGLSSSSMDEHGVPANQQKKR
KKTKKLVSKNQAPSEAEMENKMTFFSHWVNPEVKCDRPEESFAFYKSETGAKPKTGEPKKSSAKVRAEEP
NLEKHAKDLKAKPLHAKRNI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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