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Report for CCDS48509.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48509.1 Public Mus musculus 10 Gm4922 23 108 98 CCDS HistoryNCBI Gene:237300Re-query CCDS DB by CCDS ID:48509.1Re-query CCDS DB by GeneID:237300See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48509.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055107.6 ENSMUSP00000055273.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055107.6Link to Ensembl Protein Viewer:ENSMUSP00000055273.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055107Re-query CCDS DB by Protein ID:ENSMUSP00000055273
Original member Current member EBI ENSMUST00000216654.1 ENSMUSP00000149756.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216654.1Link to Ensembl Protein Viewer:ENSMUSP00000149756.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216654Re-query CCDS DB by Protein ID:ENSMUSP00000149756
Original member Current member NCBI NM_177706.4 NP_808374.1 Accepted alive Link to Nucleotide Sequence:NM_177706.4Link to Protein Sequence:NP_808374.1Re-query CCDS DB by Nucleotide ID:NM_177706Re-query CCDS DB by Protein ID:NP_808374Link to BLAST:NP_808374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808374.1 497 Q8C0N0 497 100% 0 0

Chromosomal Locations for CCDS 48509.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18783479 18784972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGTACTCTGACAGCGAGGATGAGTCATCAGAGCTCAGCACTGTGCTCAGCATGTTTGAGGAGAAGGAGT
TCACCAGGCAGTACACCGTCCTGAAGACCTTGAGCCAGCATGGCACTACTGAAGTGAGGCTATGCTCCCA
TCACCTCACAGGTGTCACAGTTGCTGTCAAAGCTCTGAAGTACCAGAGGTGGTGGGAGCCAAAGGTTTCA
GAAGTCGAAATCATGAAGATGCTCAGCCACCCTAACATTGTTTCCCTTCTGCAAGTGATAGAGACAGAAC
AGAACATTTATCTGATTATGGAAGTGGCCCAAGGCACACAGCTACATAATCGAGTCCAGGAGGCTAGGTG
CCTGAAGGAAGATGAAGCAAGAAGCATATTTGTTCAGTTGCTCAGTGCCATAGGCTACTGTCATGGTGAA
GGTGTTGTTCACAGAGACCTAAAGCCTGACAATGTCATAGTTGATGAGCATGGAAATGTCAAAATTGTTG
ACTTTGGGCTAGGTGCCAGATTCATGCCTGGGCAGAAATTGGAAAGGCTGTGTGGAGCCTTCCAGTTCAT
TCCTCCAGAGATATTCCTAGGGCTCCCTTATGATGGCCCAAAAGTAGACATATGGGCCTTGGGGGTTCTT
TTGTATTATATGGTGACAGGGATTTTTCCATTTGTAGGGTCCACCTTGTCAGAAATTAGCAAGGAAGTTC
TACAAGGGAGGTATGAAATTCCTTATAATCTCTCTAAAGACTTAAGGAGCATGATAGGCCTGTTATTGGC
AACAAACGCAAGGCAGAGGCCAACTGCACAAGACCTCCTAAGTCATCCATGGCTTCAGGAAGGGGAAAAG
ACTATCACATTTCATTCCAATGGAGACACCAGCTTTCCAGACCCTGACATAATGGCAGCCATGAAAAATA
TTGGGTTTCATGTGCAGGACATTAGAGAATCATTAAAACACAGAAAGTTCGATGAAACTATGGCTACATA
TAACTTACTGAGAGCTGAGGCATGTCAGGATGATGGCAATTATGTTCAAACAAAGTTAATGAATCCAGGG
ATGCCACCTTTCCCTTCAGTAACAGACTCTGGAGCTTTTTCTCTGCCTCCTAGGAGAAGGGCCAGTGAAC
CTTCCTTTAAAGTATTAGTCTCATCTACTGAAGAACATCAATTAAGACAAACTGGGGGGACAAATGCCCC
TTTTCCACCCAAGAAAACACCCACTATGGGCAGAAGTCAGAAACAGAAACGTGCCATGACTGCCCCTTGT
ATTTGTTTACTGAGAAACACTTACATAGATACAGAAGACAGCAGCTTTTGCACTAGCTCCCAGGCAGAAA
AGACTTCAAGTGATCCAGAGAAAAGTGAGACTTCAACTTCATGCCCTCTGACACCTAGGGGCTGGAGGAA
ATGGAAGAAGAGAATTGTAGCATGCATCCAGACATTGTGTTGCTGCACGTTGCCTCAAAAAAAATGTCCG
AGGAGTGTGCATCCCCAAAAGTGA

Translation (497 aa):
MYSDSEDESSELSTVLSMFEEKEFTRQYTVLKTLSQHGTTEVRLCSHHLTGVTVAVKALKYQRWWEPKVS
EVEIMKMLSHPNIVSLLQVIETEQNIYLIMEVAQGTQLHNRVQEARCLKEDEARSIFVQLLSAIGYCHGE
GVVHRDLKPDNVIVDEHGNVKIVDFGLGARFMPGQKLERLCGAFQFIPPEIFLGLPYDGPKVDIWALGVL
LYYMVTGIFPFVGSTLSEISKEVLQGRYEIPYNLSKDLRSMIGLLLATNARQRPTAQDLLSHPWLQEGEK
TITFHSNGDTSFPDPDIMAAMKNIGFHVQDIRESLKHRKFDETMATYNLLRAEACQDDGNYVQTKLMNPG
MPPFPSVTDSGAFSLPPRRRASEPSFKVLVSSTEEHQLRQTGGTNAPFPPKKTPTMGRSQKQKRAMTAPC
ICLLRNTYIDTEDSSFCTSSQAEKTSSDPEKSETSTSCPLTPRGWRKWKKRIVACIQTLCCCTLPQKKCP
RSVHPQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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