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Report for CCDS21168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21168.1 Public Mus musculus 7 Lim2 23 108 98 CCDS HistoryNCBI Gene:233187Re-query CCDS DB by CCDS ID:21168.1Re-query CCDS DB by GeneID:233187See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004732.6 ENSMUSP00000004732.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004732.6Link to Ensembl Protein Viewer:ENSMUSP00000004732.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000004732Re-query CCDS DB by Protein ID:ENSMUSP00000004732
Original member Current member NCBI NM_177693.4 NP_808361.1 Accepted alive Link to Nucleotide Sequence:NM_177693.4Link to Protein Sequence:NP_808361.1Re-query CCDS DB by Nucleotide ID:NM_177693Re-query CCDS DB by Protein ID:NP_808361Link to BLAST:NP_808361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808361.1 173 P56563 173 100% 0 0

Chromosomal Locations for CCDS 21168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43430591 43430765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43433568 43433717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43435306 43435440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43435648 43435709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTACAGCTTCATGGGTGGCGGCCTCTTCTGTGCCTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAG
CAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACACCAGGGCCTGTGGCGTTACTGCCT
GGGCAACAAGTGCTTCCTGCAGACCGAGAGCATCGCATATTGGAATGCCACCCGGGCTTTCATGATCCTG
TCTGCCCTGTGTGCCACCTCGGGCATCATCATGGGTGTCCTAGCCTTTGCGCAGCAATCCACCTTCACCC
GTCTCTCCAGGCCCTTCTCTGCCGGCATCATGTTTTTTGCCTCCACCCTTTTTGTCCTGTTGGCCTTGGC
TATTTACACTGGAGTCACCGTCAGTTTCCTCGGCCGCCGCTTTGGAGACTGGCGCTTTTCATGGTCTTAC
ATCCTGGGCTGGGTGGCCCTGCTCATGACCTTCTTTGCAGGAATTTTCTACATGTGTGCCTACCGGATGC
ATGAGTGCCGGCGCCTAGCCACCCCACGCTGA

Translation (173 aa):
MYSFMGGGLFCAWVGTILLVVATATDHWMQYRLSGSFAHQGLWRYCLGNKCFLQTESIAYWNATRAFMIL
SALCATSGIIMGVLAFAQQSTFTRLSRPFSAGIMFFASTLFVLLALAIYTGVTVSFLGRRFGDWRFSWSY
ILGWVALLMTFFAGIFYMCAYRMHECRRLATPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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