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Report for CCDS10793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10793.1 Public Homo sapiens 16 CFAP20 24 110 108 CCDS HistoryNCBI Gene:29105Re-query CCDS DB by CCDS ID:10793.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10793.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262498.8 ENSP00000262498.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262498.8Link to Ensembl Protein Viewer:ENSP00000262498.3Re-query CCDS DB by Nucleotide ID:ENST00000262498Re-query CCDS DB by Protein ID:ENSP00000262498
Original member Current member NCBI NM_013242.3 NP_037374.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013242.3Link to Protein Sequence:NP_037374.1Re-query CCDS DB by Nucleotide ID:NM_013242Re-query CCDS DB by Protein ID:NP_037374Link to BLAST:NP_037374.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037374.1 193 Q9Y6A4 193 100% 0 0

Chromosomal Locations for CCDS 10793.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58114025 58114030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58114810 58114920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58115269 58115457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58116041 58116152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58116872 58116951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58129032 58129115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGTTCAAAAACACGTTCCAGAGCGGCTTCCTCTCCATCCTCTACAGCATCGGCAGCAAGCCTCTGCAAA
TCTGGGACAAAAAGGTACGGAATGGCCACATCAAAAGAATCACTGATAATGACATCCAGTCCCTGGTGCT
AGAGATTGAAGGGACAAATGTAAGCACCACATATATCACATGCCCTGCAGACCCCAAGAAGACGCTGGGA
ATTAAACTTCCTTTCCTTGTCATGATTATCAAAAACCTGAAGAAGTATTTTACCTTCGAAGTGCAGGTAC
TAGATGACAAGAATGTGCGTCGTCGCTTTCGGGCAAGTAACTACCAGAGCACCACCCGGGTCAAACCCTT
CATCTGCACCATGCCCATGCGGCTGGATGACGGCTGGAACCAGATTCAGTTCAACTTGCTAGACTTCACA
CGGCGAGCATACGGCACCAATTACATCGAGACCCTCAGAGTGCAGATCCATGCAAATTGTCGCATCCGAC
GGGTTTACTTCTCAGACAGACTCTACTCAGAAGATGAGCTGCCGGCAGAGTTCAAACTGTATCTCCCAGT
TCAGAACAAGGCAAAGCAATAA

Translation (193 aa):
MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLG
IKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLLDFT
RRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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