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Report for CCDS14239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14239.1 Public Homo sapiens X PRRG1 24 110 108 CCDS HistoryNCBI Gene:5638Re-query CCDS DB by CCDS ID:14239.1Re-query CCDS DB by GeneID:5638See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378628.9 ENSP00000367894.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378628.9Link to Ensembl Protein Viewer:ENSP00000367894.4Re-query CCDS DB by Nucleotide ID:ENST00000378628Re-query CCDS DB by Protein ID:ENSP00000367894
Original member Current member EBI ENST00000449135.6 ENSP00000390332.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449135.6Link to Ensembl Protein Viewer:ENSP00000390332.2Re-query CCDS DB by Nucleotide ID:ENST00000449135Re-query CCDS DB by Protein ID:ENSP00000390332
Original member Current member EBI ENST00000543642.5 ENSP00000443271.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543642.5Link to Ensembl Protein Viewer:ENSP00000443271.1Re-query CCDS DB by Nucleotide ID:ENST00000543642Re-query CCDS DB by Protein ID:ENSP00000443271
Original member Current member EBI ENST00000542554.5 ENSP00000444278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542554.5Link to Ensembl Protein Viewer:ENSP00000444278.1Re-query CCDS DB by Nucleotide ID:ENST00000542554Re-query CCDS DB by Protein ID:ENSP00000444278
Original member Current member NCBI NM_000950.3 NP_000941.1 Accepted alive Link to Nucleotide Sequence:NM_000950.3Link to Protein Sequence:NP_000941.1Re-query CCDS DB by Nucleotide ID:NM_000950Re-query CCDS DB by Protein ID:NP_000941Link to BLAST:NP_000941.1
Original member Current member NCBI NM_001142395.2 NP_001135867.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142395.2Link to Protein Sequence:NP_001135867.1Re-query CCDS DB by Nucleotide ID:NM_001142395Re-query CCDS DB by Protein ID:NP_001135867Link to BLAST:NP_001135867.1
Original member Current member NCBI NM_001173489.2 NP_001166960.1 Accepted alive Link to Nucleotide Sequence:NM_001173489.2Link to Protein Sequence:NP_001166960.1Re-query CCDS DB by Nucleotide ID:NM_001173489Re-query CCDS DB by Protein ID:NP_001166960Link to BLAST:NP_001166960.1
Original member Current member NCBI NM_001173490.2 NP_001166961.1 Accepted alive Link to Nucleotide Sequence:NM_001173490.2Link to Protein Sequence:NP_001166961.1Re-query CCDS DB by Nucleotide ID:NM_001173490Re-query CCDS DB by Protein ID:NP_001166961Link to BLAST:NP_001166961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000941.1 218 O14668-1 218 100% 0 0
NP_001135867.1 218 O14668-1 218 100% 0 0
NP_001166960.1 218 O14668-1 218 100% 0 0
NP_001166961.1 218 O14668-1 218 100% 0 0

Chromosomal Locations for CCDS 14239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 37406250 37406259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37425840 37426000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 37453136 37453621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGGGAGGGTTTTCCTCACGGGAGAAAAAGCCAATTCCATATTAAAACGCTACCCAAGAGCTAATGGGT
TTTTTGAAGAAATAAGACAGGGCAACATTGAGCGTGAGTGCAAAGAAGAATTCTGTACATTTGAAGAAGC
AAGAGAAGCTTTTGAAAATAATGAAAAAACTAAGGAGTTTTGGAGCACCTACACAAAAGCGCAACAAGGG
GAGAGTAACCGAGGAAGTGACTGGTTTCAGTTTTACCTTACCTTTCCGTTAATCTTTGGCCTCTTCATTA
TCCTCCTTGTCATTTTCCTAATCTGGAGATGCTTCCTAAGAAACAAAACTCGTAGACAGACAGTGACTGA
AGGCCACATTCCTTTCCCTCAGCACCTTAATATTATCACCCCACCCCCCCCACCAGATGAAGTGTTTGAC
AGCAGTGGATTGTCTCCAGGCTTTCTGGGATATGTAGTTGGGCGCTCAGATTCCGTCTCTACTCGCCTGT
CCAATTGTGATCCCCCGCCAACCTATGAGGAAGCCACTGGCCAAGTGAACCTGCAGAGGAGTGAAACAGA
ACCTCATTTAGACCCACCCCCAGAGTATGAGGACATAGTCAACTCCAACTCAGCCAGTGCCATTCCTATG
GTGCCTGTGGTCACCACCATCAAATGA

Translation (218 aa):
MGRVFLTGEKANSILKRYPRANGFFEEIRQGNIERECKEEFCTFEEAREAFENNEKTKEFWSTYTKAQQG
ESNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTEGHIPFPQHLNIITPPPPPDEVFD
SSGLSPGFLGYVVGRSDSVSTRLSNCDPPPTYEEATGQVNLQRSETEPHLDPPPEYEDIVNSNSASAIPM
VPVVTTIK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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