NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9634.1 Public Homo sapiens 14 STXBP6 24 110 108 CCDS HistoryNCBI Gene:29091Re-query CCDS DB by CCDS ID:9634.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9634.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323944.10 ENSP00000324302.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323944.10Link to Ensembl Protein Viewer:ENSP00000324302.5Re-query CCDS DB by Nucleotide ID:ENST00000323944Re-query CCDS DB by Protein ID:ENSP00000324302
Original member Current member EBI ENST00000396700.5 ENSP00000379928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396700.5Link to Ensembl Protein Viewer:ENSP00000379928.1Re-query CCDS DB by Nucleotide ID:ENST00000396700Re-query CCDS DB by Protein ID:ENSP00000379928
Original member Current member EBI ENST00000419632.6 ENSP00000397212.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419632.6Link to Ensembl Protein Viewer:ENSP00000397212.2Re-query CCDS DB by Nucleotide ID:ENST00000419632Re-query CCDS DB by Protein ID:ENSP00000397212
Original member Current member EBI ENST00000550887.5 ENSP00000449379.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000550887.5Link to Ensembl Protein Viewer:ENSP00000449379.1Re-query CCDS DB by Nucleotide ID:ENST00000550887Re-query CCDS DB by Protein ID:ENSP00000449379
Original member Current member EBI ENST00000546511.5 ENSP00000449536.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546511.5Link to Ensembl Protein Viewer:ENSP00000449536.1Re-query CCDS DB by Nucleotide ID:ENST00000546511Re-query CCDS DB by Protein ID:ENSP00000449536
Original member Current member NCBI NM_001304476.3 NP_001291405.1 Accepted alive Link to Nucleotide Sequence:NM_001304476.3Link to Protein Sequence:NP_001291405.1Re-query CCDS DB by Nucleotide ID:NM_001304476Re-query CCDS DB by Protein ID:NP_001291405Link to BLAST:NP_001291405.1
Original member Current member NCBI NM_001304477.3 NP_001291406.1 Accepted alive Link to Nucleotide Sequence:NM_001304477.3Link to Protein Sequence:NP_001291406.1Re-query CCDS DB by Nucleotide ID:NM_001304477Re-query CCDS DB by Protein ID:NP_001291406Link to BLAST:NP_001291406.1
Original member Current member NCBI NM_001351940.3 NP_001338869.2 Accepted alive Link to Nucleotide Sequence:NM_001351940.3Link to Protein Sequence:NP_001338869.2Re-query CCDS DB by Nucleotide ID:NM_001351940Re-query CCDS DB by Protein ID:NP_001338869Link to BLAST:NP_001338869.2
Original member Current member NCBI NM_001351941.3 NP_001338870.1 Accepted alive Link to Nucleotide Sequence:NM_001351941.3Link to Protein Sequence:NP_001338870.1Re-query CCDS DB by Nucleotide ID:NM_001351941Re-query CCDS DB by Protein ID:NP_001338870Link to BLAST:NP_001338870.1
Original member Current member NCBI NM_001351942.3 NP_001338871.1 Accepted alive Link to Nucleotide Sequence:NM_001351942.3Link to Protein Sequence:NP_001338871.1Re-query CCDS DB by Nucleotide ID:NM_001351942Re-query CCDS DB by Protein ID:NP_001338871Link to BLAST:NP_001338871.1
Original member Current member NCBI NM_001351943.3 NP_001338872.1 Accepted alive Link to Nucleotide Sequence:NM_001351943.3Link to Protein Sequence:NP_001338872.1Re-query CCDS DB by Nucleotide ID:NM_001351943Re-query CCDS DB by Protein ID:NP_001338872Link to BLAST:NP_001338872.1
Original member Current member NCBI NM_001394410.1 NP_001381339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394410.1Link to Protein Sequence:NP_001381339.1Re-query CCDS DB by Nucleotide ID:NM_001394410Re-query CCDS DB by Protein ID:NP_001381339Link to BLAST:NP_001381339.1
Original member Current member NCBI NM_001394411.1 NP_001381340.1 Accepted alive Link to Nucleotide Sequence:NM_001394411.1Link to Protein Sequence:NP_001381340.1Re-query CCDS DB by Nucleotide ID:NM_001394411Re-query CCDS DB by Protein ID:NP_001381340Link to BLAST:NP_001381340.1
Original member Current member NCBI NM_001394412.1 NP_001381341.1 Accepted alive Link to Nucleotide Sequence:NM_001394412.1Link to Protein Sequence:NP_001381341.1Re-query CCDS DB by Nucleotide ID:NM_001394412Re-query CCDS DB by Protein ID:NP_001381341Link to BLAST:NP_001381341.1
Original member Current member NCBI NM_001394413.1 NP_001381342.1 Accepted alive Link to Nucleotide Sequence:NM_001394413.1Link to Protein Sequence:NP_001381342.1Re-query CCDS DB by Nucleotide ID:NM_001394413Re-query CCDS DB by Protein ID:NP_001381342Link to BLAST:NP_001381342.1
Original member Current member NCBI NM_001394414.1 NP_001381343.1 Accepted alive Link to Nucleotide Sequence:NM_001394414.1Link to Protein Sequence:NP_001381343.1Re-query CCDS DB by Nucleotide ID:NM_001394414Re-query CCDS DB by Protein ID:NP_001381343Link to BLAST:NP_001381343.1
Original member Current member NCBI NM_001394415.1 NP_001381344.1 Accepted alive Link to Nucleotide Sequence:NM_001394415.1Link to Protein Sequence:NP_001381344.1Re-query CCDS DB by Nucleotide ID:NM_001394415Re-query CCDS DB by Protein ID:NP_001381344Link to BLAST:NP_001381344.1
Original member Current member NCBI NM_001394416.1 NP_001381345.1 Accepted alive Link to Nucleotide Sequence:NM_001394416.1Link to Protein Sequence:NP_001381345.1Re-query CCDS DB by Nucleotide ID:NM_001394416Re-query CCDS DB by Protein ID:NP_001381345Link to BLAST:NP_001381345.1
Original member Current member NCBI NM_014178.9 NP_054897.4 Accepted alive Link to Nucleotide Sequence:NM_014178.9Link to Protein Sequence:NP_054897.4Re-query CCDS DB by Nucleotide ID:NM_014178Re-query CCDS DB by Protein ID:NP_054897Link to BLAST:NP_054897.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291405.1 210 Q8NFX7-1 210 100% 0 0
NP_001291406.1 210 Q8NFX7-1 210 100% 0 0
NP_001338869.2 210 Q8NFX7-1 210 100% 0 0
NP_001338870.1 210 Q8NFX7-1 210 100% 0 0
NP_001338871.1 210 Q8NFX7-1 210 100% 0 0
NP_001338872.1 210 Q8NFX7-1 210 100% 0 0
NP_001381339.1 210 Q8NFX7-1 210 100% 0 0
NP_001381340.1 210 Q8NFX7-1 210 100% 0 0
NP_001381341.1 210 Q8NFX7-1 210 100% 0 0
NP_001381342.1 210 Q8NFX7-1 210 100% 0 0
NP_001381343.1 210 Q8NFX7-1 210 100% 0 0
NP_001381344.1 210 Q8NFX7-1 210 100% 0 0
NP_001381345.1 210 Q8NFX7-1 210 100% 0 0
NP_054897.4 210 Q8NFX7-1 210 100% 0 0

Chromosomal Locations for CCDS 9634.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24812709 24812732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24819037 24819194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24855936 24856101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24857027 24857157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24974665 24974818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGAGTGCCAAATCTGCTATCAGCAAGGAAATTTTTGCACCTCTTGATGAAAGGATGCTGGGAGCTGTCC
AAGTCAAGAGGAGGACAAAGAAAAAGATTCCTTTCTTGGCAACTGGAGGTCAAGGCGAATATTTAACTTA
TATCTGCCTGTCAGTGACAAACAAGAAACCCACACAGGCGTCCATCACAAAGGTCAAACAGTTTGAAGGC
TCCACATCATTTGTTCGGAGATCACAGTGGATGCTCGAGCAGCTTCGCCAGGTTAATGGTATCGATCCTA
ATGGGGATTCGGCAGAGTTTGATTTGTTGTTTGAAAATGCTTTTGACCAGTGGGTAGCCAGCACAGCGTC
AGAAAAATGCACCTTCTTCCAGATCCTCCACCATACCTGCCAGAGGTACCTCACGGACAGGAAGCCAGAG
TTTATTAACTGCCAATCCAAAATTATGGGAGGAAACAGCATCCTCCATTCAGCTGCTGACAGCGTGACCA
GCGCAGTGCAGAAGGCAAGCCAGGCCTTGAATGAGCGTGGAGAGCGATTAGGCCGAGCAGAGGAGAAGAC
AGAAGACCTGAAGAACAGCGCCCAGCAGTTTGCAGAAACTGCGCACAAGCTTGCCATGAAGCACAAATGT
TGA

Translation (210 aa):
MSAKSAISKEIFAPLDERMLGAVQVKRRTKKKIPFLATGGQGEYLTYICLSVTNKKPTQASITKVKQFEG
STSFVRRSQWMLEQLRQVNGIDPNGDSAEFDLLFENAFDQWVASTASEKCTFFQILHHTCQRYLTDRKPE
FINCQSKIMGGNSILHSAADSVTSAVQKASQALNERGERLGRAEEKTEDLKNSAQQFAETAHKLAMKHKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH