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Report for CCDS20938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20938.1 Public Mus musculus 7 Vmn1r181 23 108 98 CCDS HistoryNCBI Gene:404289Re-query CCDS DB by CCDS ID:20938.1Re-query CCDS DB by GeneID:404289See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181796.3 ENSMUSP00000137685.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181796.3Link to Ensembl Protein Viewer:ENSMUSP00000137685.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000181796Re-query CCDS DB by Protein ID:ENSMUSP00000137685
Original member Current member EBI ENSMUST00000227637.1 ENSMUSP00000153708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227637.1Link to Ensembl Protein Viewer:ENSMUSP00000153708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227637Re-query CCDS DB by Protein ID:ENSMUSP00000153708
Original member Current member EBI ENSMUST00000226978.1 ENSMUSP00000153788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226978.1Link to Ensembl Protein Viewer:ENSMUSP00000153788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226978Re-query CCDS DB by Protein ID:ENSMUSP00000153788
Original member Current member EBI ENSMUST00000226843.1 ENSMUSP00000154127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226843.1Link to Ensembl Protein Viewer:ENSMUSP00000154127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226843Re-query CCDS DB by Protein ID:ENSMUSP00000154127
Original member Current member EBI ENSMUST00000228399.1 ENSMUSP00000154337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228399.1Link to Ensembl Protein Viewer:ENSMUSP00000154337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228399Re-query CCDS DB by Protein ID:ENSMUSP00000154337
Original member Current member EBI ENSMUST00000228842.1 ENSMUSP00000154403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228842.1Link to Ensembl Protein Viewer:ENSMUSP00000154403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228842Re-query CCDS DB by Protein ID:ENSMUSP00000154403
Original member Current member NCBI NM_207546.2 NP_997429.2 Accepted alive Link to Nucleotide Sequence:NM_207546.2Link to Protein Sequence:NP_997429.2Re-query CCDS DB by Nucleotide ID:NM_207546Re-query CCDS DB by Protein ID:NP_997429Link to BLAST:NP_997429.2

Chromosomal Locations for CCDS 20938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 23984112 23985026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGTCTGCTCATGATAAATCCCTGAAAACCACCGAGGAAGTGGCTCTTCAGATTCTCTTGCTTTGCCAGT
TTGGGGTTGGGACTTTTGCCAATGTATTTCTCTTTGTCCATAATTTCTTTCCAATCCTGACTGGTTCTAA
ACAGAGGCCCAGACAGGTGATTTTAAGCCACATAGCTGTGGCCAATGCCTTGACTCTCTTCATCACTACA
TTTCCAAACAACATGGCTTTTGCTCCAAGAAGTCCTCAAAATGACCTCAAATGTAAATTGGAATTCTTCA
TTCGCATGGTGGCAAGAAGCACAGGCTTATGTTCCACCTGTGTCTTGAGTATCCATCAATTTCTCACTCT
TGTTCCTGTTAATAGAGGAAAACTTATACTCAGAACAAGTGTCCCGAATTTGGTGAGTTATTCTTGTTAC
AGTTGTTGGTTCTTCAGTGTCTTAAATAACATCTACATTCCAATTAAGGTCACTGGTCCACAGATAACAG
ACAGTAAAAATGACTCCAAAAGCAAGTTGTTCTGTTCCACTTCTGGATTTAATGTGGGTATTGTCTTCTT
GCGATTTGCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTACTTCTCCTC
CATAGACATCGCCAGCGAATGCAGTACATATTCACTCTCAATCAGGACCACAGAAGCCAAGCTGAGACCA
AAGCAACCCATACTATCCTGATGCTGGTAGTCACATTTGTTAGCTTTTATCTTCTACATTTTATTTGTAT
CATCTTTTACACCTTTTTTATATATTCTCACCAATTCCTGAGGCATTGCAGTGAAGTTCTGGTTGTAGGT
TTCCCTACTATTTCTCCTTTACTGTTGATCTTCAGAGACCCTAAGGGTCCTTGTTCTGTGTTCTTCAACT
GTTGA

Translation (304 aa):
MSAHDKSLKTTEEVALQILLLCQFGVGTFANVFLFVHNFFPILTGSKQRPRQVILSHIAVANALTLFITT
FPNNMAFAPRSPQNDLKCKLEFFIRMVARSTGLCSTCVLSIHQFLTLVPVNRGKLILRTSVPNLVSYSCY
SCWFFSVLNNIYIPIKVTGPQITDSKNDSKSKLFCSTSGFNVGIVFLRFAHDATFMSIMVWTSVSMVLLL
HRHRQRMQYIFTLNQDHRSQAETKATHTILMLVVTFVSFYLLHFICIIFYTFFIYSHQFLRHCSEVLVVG
FPTISPLLLIFRDPKGPCSVFFNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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