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Report for CCDS16334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16334.1 Public Mus musculus 2 Or4p19 23 108 98 CCDS HistoryNCBI Gene:258920Re-query CCDS DB by CCDS ID:16334.1Re-query CCDS DB by GeneID:258920See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099824.4 ENSMUSP00000097412.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099824.4Link to Ensembl Protein Viewer:ENSMUSP00000097412.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099824Re-query CCDS DB by Protein ID:ENSMUSP00000097412
Original member Current member EBI ENSMUST00000216121.2 ENSMUSP00000149838.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216121.2Link to Ensembl Protein Viewer:ENSMUSP00000149838.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216121Re-query CCDS DB by Protein ID:ENSMUSP00000149838
Original member Current member EBI ENSMUST00000217320.2 ENSMUSP00000150965.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217320.2Link to Ensembl Protein Viewer:ENSMUSP00000150965.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217320Re-query CCDS DB by Protein ID:ENSMUSP00000150965
Original member Current member NCBI NM_146918.2 NP_667129.2 Accepted alive Link to Nucleotide Sequence:NM_146918.2Link to Protein Sequence:NP_667129.2Re-query CCDS DB by Nucleotide ID:NM_146918Re-query CCDS DB by Protein ID:NP_667129Link to BLAST:NP_667129.2

Chromosomal Locations for CCDS 16334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88411727 88412656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGGGAATGTTACTGTGTTTATTCTCTTGGGACTTTCTGACAATCAAAACATTGAAGTCCTCTGCTTTG
TATTATTTCTATTTTGCTACATTGCTATTTGGATGGGTAATGTTCTCATAATGGTTTCTATCACATGCAC
TCAGCTCATGGACCAACCTATGTATTTCTTCCTCCATTATTTATCACTTTGTGATCTTTGCTACACATCC
ACAGTGACTCCCAAACTCCTGACTGATTTACTGGCAGAAAGAAAGATTATTTCCTATAATAACTGCATGA
CACAGCTCTTTGTTCTTCATTTCCTTGGTGCCATTGAGATCTTCATTCTCACAGCAATGGCCTATGACCG
TTATGTTGCCATCTGCAGGCCCCTGCACTACACTGTCATTATGAGCAGACAGAGATGCAACGAAATCCTT
GCAGCTTGTTGTACTGGGGGATTTGTGCACTCAGCCAGTCAGTCACTTCTCATTGCTTGTTTGTCCTTTT
GTCATCACAATGAGATAGATCACTACTTCTGTGATGTATATCCTTTATTGAAATTGGCTTGCACTGATAC
ACATAGAATTGGCCTCTTTGTTATTGTTGATTCTGGCTTAATTGCTTTGGTGACATTTGTAGTTTTAATG
GTATCTTATTTTCTGATAGCATACACCATTAGTGTTTACCCTGCAGAGAGTCGTTCCAAAGCTCTTTCAA
CATGTAGTTCTCATATAACCATTGTGGTCCTGTTTTTTGTGCCTGTTTTCTTCATTTACATCAGACCAAA
TATAACATTCCCAGAAGACAAAGTGTTTGCTCTTTTCTACACCATCATAGCTCCCATGTTCAACCCTCTG
ATCTACACACTGAGAAACCTAGAGATGAAGCGTGCAATTAAAAAAATGTGGTATCATCAAATACCTTCAT
ACAAGAAACAAATTCCATGA

Translation (309 aa):
MGNVTVFILLGLSDNQNIEVLCFVLFLFCYIAIWMGNVLIMVSITCTQLMDQPMYFFLHYLSLCDLCYTS
TVTPKLLTDLLAERKIISYNNCMTQLFVLHFLGAIEIFILTAMAYDRYVAICRPLHYTVIMSRQRCNEIL
AACCTGGFVHSASQSLLIACLSFCHHNEIDHYFCDVYPLLKLACTDTHRIGLFVIVDSGLIALVTFVVLM
VSYFLIAYTISVYPAESRSKALSTCSSHITIVVLFFVPVFFIYIRPNITFPEDKVFALFYTIIAPMFNPL
IYTLRNLEMKRAIKKMWYHQIPSYKKQIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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