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Report for CCDS16224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16224.1 Public Mus musculus 2 Or5ap2 23 108 98 CCDS HistoryNCBI Gene:258573Re-query CCDS DB by CCDS ID:16224.1Re-query CCDS DB by GeneID:258573See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055840.6 ENSMUSP00000058242.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055840.6Link to Ensembl Protein Viewer:ENSMUSP00000058242.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055840Re-query CCDS DB by Protein ID:ENSMUSP00000058242
Original member Current member EBI ENSMUST00000215347.2 ENSMUSP00000150285.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215347.2Link to Ensembl Protein Viewer:ENSMUSP00000150285.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215347Re-query CCDS DB by Protein ID:ENSMUSP00000150285
Original member Current member NCBI NM_146580.2 NP_666791.1 Accepted alive Link to Nucleotide Sequence:NM_146580.2Link to Protein Sequence:NP_666791.1Re-query CCDS DB by Nucleotide ID:NM_146580Re-query CCDS DB by Protein ID:NP_666791Link to BLAST:NP_666791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666791.1 317 Q8VFK7 317 100% 0 0

Chromosomal Locations for CCDS 16224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85849454 85850407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGTCAGGAGTGGAAAAGGAATCCAAAATAAGAATGCCACAGAAGTGACAGAATTTATCCTTTTGGGTC
TCTCAGACAATCCAGACTTGCAAGGTGTCCTCTTTGCATTATTCCTGATCATCTACACGATGACACTGGT
GGGTAATTTGGGCATGATGGCCCTGATTAAGATTGACCGCAGTCTGCACACACCTATGTACTTCTTTCTC
AGCAGCCTTTCTTTTGTTGATGCCTCTTATTCTTCTTCTGTCACCCCCAAGATGCTAGTGAACCTCATGG
CTGAGGATAAGAGCATTTCTTTCAATGGATGTGCTACCCAGTTCTTTTTCTTCGGTTCCTTCTTGGGAAC
TGAATGCTTCCTGCTAGCCATGATGGCCTATGACCGCTATGCAGCCATCTGGAATCCCCTGCTATACCCA
GTTCTCATGTCTGGGAGAATTTGTTTCATGTTGGTGTCTACTTCATTCTTAGCAGGCTTTGGCAATGCAG
CCATCCACACAGGGATGACTTTCAGACTGTCCTTTTGTGGCTCTAATAAGATCAATCATTTCTATTGTGA
CACCCCACCCCTGCTCAAACTCTCTTGCTCTGACACTCACATTAATGGCATTGTGATCATGGCCTTCTCC
AGTTTCAATGTCATCAGTTGTGTTCTGATTGTTTTGATATCTTACTTGTGCATCCTCATTGCCATACTGA
AGATGCCTTCAGCAGAGGGAAGACACAAAGCCTTCTCCACCTGTGCCTCCCACCTCATGGCTGTTACCAT
CTTTTTTGGAACAATTCTTTTCATGTACTTGCGCCCTACCTCTAGCTACTCTATGGAACAGGACAAAGTT
GTCTCTGTGTTTTATACAGTAGTCATTCCAATGCTTAATCCTCTCATCTATAGTTTAAAAAATAAAGATG
TTAAGAAAGCAGTGAAGAAAATCTTACATAATTATGTGGTTTGA

Translation (317 aa):
MVRSGKGIQNKNATEVTEFILLGLSDNPDLQGVLFALFLIIYTMTLVGNLGMMALIKIDRSLHTPMYFFL
SSLSFVDASYSSSVTPKMLVNLMAEDKSISFNGCATQFFFFGSFLGTECFLLAMMAYDRYAAIWNPLLYP
VLMSGRICFMLVSTSFLAGFGNAAIHTGMTFRLSFCGSNKINHFYCDTPPLLKLSCSDTHINGIVIMAFS
SFNVISCVLIVLISYLCILIAILKMPSAEGRHKAFSTCASHLMAVTIFFGTILFMYLRPTSSYSMEQDKV
VSVFYTVVIPMLNPLIYSLKNKDVKKAVKKILHNYVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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