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Report for CCDS16217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16217.1 Public Mus musculus 2 Or9g3 23 108 98 CCDS HistoryNCBI Gene:258561Re-query CCDS DB by CCDS ID:16217.1Re-query CCDS DB by GeneID:258561See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099916.1 ENSMUSP00000097500.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099916.1Link to Ensembl Protein Viewer:ENSMUSP00000097500.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099916Re-query CCDS DB by Protein ID:ENSMUSP00000097500
Original member Current member EBI ENSMUST00000214958.1 ENSMUSP00000148952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214958.1Link to Ensembl Protein Viewer:ENSMUSP00000148952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214958Re-query CCDS DB by Protein ID:ENSMUSP00000148952
Original member Current member EBI ENSMUST00000214255.1 ENSMUSP00000149946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214255.1Link to Ensembl Protein Viewer:ENSMUSP00000149946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214255Re-query CCDS DB by Protein ID:ENSMUSP00000149946
Original member Current member NCBI NM_146568.2 NP_666779.1 Accepted alive Link to Nucleotide Sequence:NM_146568.2Link to Protein Sequence:NP_666779.1Re-query CCDS DB by Nucleotide ID:NM_146568Re-query CCDS DB by Protein ID:NP_666779Link to BLAST:NP_666779.1

Chromosomal Locations for CCDS 16217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85759439 85760374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGAGAGGGGCAATCACACAGTGACTGGCTTCATCTTGCTGGGCTTCTCAACAGACCCAGTGATGCAGA
AGATACTATTTGTCATGTTTCTCGGAGTATATTCCCTGACATTGCTAGGAAACACCACCCTCATCATATT
GATATGCAATGACTCCAGGCTCCACACACCCATGTATTTCTTCATTGGGAATCTGTCTTTTCTGGATCTC
TGGTATTCTTCTGTCTATACTCCAAAGATCCTGGTGACCTGCATCTCTGAAGACAAAAGCATCTCCTTTG
CAGGATGTCTGTCTCAATTCTTTTTCTCTGCTGGATTGGCCTATAGTGAATGCTACCTACTGGCTGCCAT
GGCTTATGATCGCTACACTGCCATCTCGAATCCCCTGCTTTATGCTCAAGCTATGTCACGAAGGTTGTGT
GTCTGTTTGGTTGTATATTCCTATACAGGAGGATTTGTCAATGCAATAATATTAACTAGCAACACATTCA
CATTGGACTTTTGTGGTGACAATGTCATTGATGATTTTTTCTGTGATGTCCCACCTCTGGTGAAGTTGGC
ATGTGATGTCAGGGAGAGTTACCAGTCTGTGCTGTACTTCCTCCTAGCTTCCAATGTCATTTCTCCCACT
CTTCTCATCTTGACCTCCTACCTCTTCATCATTGCTGCCATCCTGAGGATCCGATCAACCCAGGGTCGTC
TCAAGGCCTTCTCCACCTGCTCGTCCCACCTCATCTCTGTGACCTTGTACTATGGCTCCATTCTCTACAT
CTACTCTCGGCCAAGTTCCAGTTATTCCTTGGAAAGGGATAAAATGGTGTCTACCTTTTATACTGTGTTA
TTCCCCATGTTGAACCCCATGATCTACAGTCTAAGGAATAAAGATGTAAAGGAAGCTCTGAGAAAACTCT
TTAAGTTAGCTCCTTCTGAAGTCTAA

Translation (311 aa):
MERGNHTVTGFILLGFSTDPVMQKILFVMFLGVYSLTLLGNTTLIILICNDSRLHTPMYFFIGNLSFLDL
WYSSVYTPKILVTCISEDKSISFAGCLSQFFFSAGLAYSECYLLAAMAYDRYTAISNPLLYAQAMSRRLC
VCLVVYSYTGGFVNAIILTSNTFTLDFCGDNVIDDFFCDVPPLVKLACDVRESYQSVLYFLLASNVISPT
LLILTSYLFIIAAILRIRSTQGRLKAFSTCSSHLISVTLYYGSILYIYSRPSSSYSLERDKMVSTFYTVL
FPMLNPMIYSLRNKDVKEALRKLFKLAPSEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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