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Report for CCDS54214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54214.1 Public Homo sapiens 19 ZNF177 24 110 108 CCDS HistoryNCBI Gene:7730Re-query CCDS DB by CCDS ID:54214.1Re-query CCDS DB by GeneID:7730See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589262.5 ENSP00000468531.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589262.5Link to Ensembl Protein Viewer:ENSP00000468531.1Re-query CCDS DB by Nucleotide ID:ENST00000589262Re-query CCDS DB by Protein ID:ENSP00000468531
Original member Current member EBI ENST00000683217.1 ENSP00000507083.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683217.1Link to Ensembl Protein Viewer:ENSP00000507083.1Re-query CCDS DB by Nucleotide ID:ENST00000683217Re-query CCDS DB by Protein ID:ENSP00000507083
Original member Current member NCBI NM_001172651.2 NP_001166122.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001172651.2Link to Protein Sequence:NP_001166122.1Re-query CCDS DB by Nucleotide ID:NM_001172651Re-query CCDS DB by Protein ID:NP_001166122Link to BLAST:NP_001166122.1
Original member Current member NCBI NM_001384659.1 NP_001371588.1 Accepted alive Link to Nucleotide Sequence:NM_001384659.1Link to Protein Sequence:NP_001371588.1Re-query CCDS DB by Nucleotide ID:NM_001384659Re-query CCDS DB by Protein ID:NP_001371588Link to BLAST:NP_001371588.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166122.1 481 Q13360-1 481 100% 0 0
NP_001371588.1 481 Q13360-1 481 100% 0 0

Chromosomal Locations for CCDS 54214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9378312 9378344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9378962 9379088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9379527 9379619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9380057 9380139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9380668 9381777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGCTGCAGGGTGGCTGACAACCTGGTCACAGAACTCAGTAACCTTCCAGGAAGTGGCAGTGGACTTTT
CCCAGGAGGAGTGGGCATTGCTGGACCCTGCTCAAAAAAATCTATACAAAGATGTGATGCTGGAGAACTT
TAGGAACCTGGCCTCAGTAGGGTATCAGCTCTGCAGACACAGTCTGATCTCCAAGGTGGATCAAGAACAG
CTGAAGACAGATGAAAGAGGAATTTTACAAGGTGACTGTGCAGACTGGGAAACTCAACTTAAACCAAAAG
ATACAATTGCTATGCAGAACATTCCTGGGGGAAAAACATCCAATGGCATAAACACGGCAGAAAATCAACC
TGGTGAGCACTCCCTGGAGTGTAACCATTGTGGGAAATTCAGAAAGAACACTCGCTTTATTTGTACAAGA
TATTGCAAGGGAGAGAAATGCTATAAATATATAAAGTATAGCAAAGTCTTCAACCATCCCTCAACTCTTA
GGAGTCATGTGAGCATTCACATTGGAGAGAAAACTCTTGAATTTACTGATTGTAGAAAAGCTTTCAATCA
AGAGTCATCCCTCAGGAAACACTTAAGAACTCCCACAGGACAGAAGTTTCAGGAGTATGAGCAATGTGAT
ATGTCCTTCAGCCTACACTCTTCCTGCTCAGTACGTGAGCAAATACCTACTGGAGAGAAAGGTGATGAAT
GCAGTGACTATGGCAAAATATCTCCCCTTAGTGTCCACACAAAAACTGGTAGTGTGGAGGAGGGTTTGGA
ATGTAATGAACATGAGAAAACTTTCACTGACCCTTTGTCCCTTCAGAACTGTGTCAGAACTCACTCTGGA
GAGATGCCCTATGAATGCAGTGACTGTGGGAAAGCCTTCATTTTTCAGTCTTCCCTTAAGAAACACATGA
GATCTCATACTGGAGAGAAGCCTTATGAGTGTGATCACTGTGGAAAATCCTTTAGCCAGAGCTCTCATCT
GAATGTGCACAAAAGAACTCACACTGGAGAGAAACCCTATGACTGTAAGGAATGTGGGAAGGCTTTCACT
GTTCCTTCATCCCTTCAGAAACATGTGAGAACCCACACTGGAGAGAAACCCTATGAATGCAGTGACTGTG
GAAAAGCCTTCATCGATCAGTCATCCCTTAAGAAACACACACGCTCTCACACTGGAGAGAAGCCTTATGA
GTGTAACCAGTGTGGAAAGTCCTTCAGCACAGGCTCTTACCTTATTGTGCACAAGAGAACTCACACTGGT
GAGAAAACCTATGAGTGTAAAGAATGTGGGAAGGCCTTTAGGAATTCCTCTTGCCTGAGGGTACACGTGA
GAACTCACACTGGAGAGAAGCCTTATAAATGTATTCAGTGTGAAAAAGCCTTTAGCACAAGCACTAACCT
TATAATGCACAAGCGAATCCACAATGGCCAGAAACTCCATGAATGA

Translation (481 aa):
MAAGWLTTWSQNSVTFQEVAVDFSQEEWALLDPAQKNLYKDVMLENFRNLASVGYQLCRHSLISKVDQEQ
LKTDERGILQGDCADWETQLKPKDTIAMQNIPGGKTSNGINTAENQPGEHSLECNHCGKFRKNTRFICTR
YCKGEKCYKYIKYSKVFNHPSTLRSHVSIHIGEKTLEFTDCRKAFNQESSLRKHLRTPTGQKFQEYEQCD
MSFSLHSSCSVREQIPTGEKGDECSDYGKISPLSVHTKTGSVEEGLECNEHEKTFTDPLSLQNCVRTHSG
EMPYECSDCGKAFIFQSSLKKHMRSHTGEKPYECDHCGKSFSQSSHLNVHKRTHTGEKPYDCKECGKAFT
VPSSLQKHVRTHTGEKPYECSDCGKAFIDQSSLKKHTRSHTGEKPYECNQCGKSFSTGSYLIVHKRTHTG
EKTYECKECGKAFRNSSCLRVHVRTHTGEKPYKCIQCEKAFSTSTNLIMHKRIHNGQKLHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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