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Report for CCDS11504.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11504.2 Public Homo sapiens 17 LRRC37A 24 110 108 CCDS HistoryNCBI Gene:9884Re-query CCDS DB by CCDS ID:11504.2Re-query CCDS DB by GeneID:9884See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11504.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320254.5 ENSP00000326324.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320254.5Link to Ensembl Protein Viewer:ENSP00000326324.5Re-query CCDS DB by Nucleotide ID:ENST00000320254Re-query CCDS DB by Protein ID:ENSP00000326324
Original member Current member NCBI NM_014834.4 NP_055649.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014834.4Link to Protein Sequence:NP_055649.4Re-query CCDS DB by Nucleotide ID:NM_014834Re-query CCDS DB by Protein ID:NP_055649Link to BLAST:NP_055649.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055649.4 1700 A6NMS7 1700 100% 0 0

Chromosomal Locations for CCDS 11504.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46295134 46297742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46299794 46299865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46302638 46302709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46305509 46305580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46306229 46306309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46322322 46322393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46322953 46323027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46328392 46328510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46330450 46331981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46332552 46332656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46335545 46335594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46337296 46337350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46337429 46337568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46337675 46337723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5103 nt):
ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCC
TCCTTATGTGGCAACTATTGTGGCTACTAGTCAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCT
CCAGCTCACCTCTAATCCCCTGGGGCCGCCTGAGTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAA
TCTCCCCATGCGCCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAG
AGATGCCAGCCCCACCCCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGG
AGAGCAGCCCCTGGAGCCAGAGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAG
GAAAGGCTCCCTGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTA
TTGGAATTACACGCCAATTATCCACACCTCAGAGTCAGAAACAGACTTTGCAGAATGAATATTCCAGTAC
AGATACACCGTATCCCGGTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCT
GAGCAAGTTGGACCTTCTCAATTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCC
AGTCCTCTTCACTCCAGCAAGAAGCCCCAGCACAGCTTCCACAGCTCCTTGAGGAAGAACCTTCTTCAAT
GCAGCAGGAGGCCCCAGCTCTGCCTCCAGAGTCCTCTATGGAGAGTCTAACTCTACCGAATCATGAGGTG
TCAGTTCAACCTCCAGGTGAGGATCAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATG
TGGAGGTTACCATAACTTCAGAGCCTACCAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAAT
TCAGTTTCCAGAGGAGGTGGAACCTTCTGCAACCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCT
ATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAGCCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCG
AATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCCAGAACATCATGAAGTCACAGTTTCACCTCC
AGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTGTGAAGCCTCCAGACGTGCAGCTCACC
ATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAGGAGGCTACAACTCGGCTCTCAG
GGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCTGCTTCCAGAGTCATCAGA
AGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTATTAATAATGAGAAC
CCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAGTCTTCCCTAA
CCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGAGCATTC
ACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAGAG
GTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAG
TATATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTAC
AGTTCAACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCC
CCGAAGAGGACTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTC
AGCATTCACACCTGACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCAT
GACAGAGGTTGAACCTTCTACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTT
CCACCTTCAGACAAGGGTCAGGCTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGG
AGCTTACCATAACTACAAAACCTACTACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCA
GCCTCCAGACCTGGGACTTGCCATCATTCCAGAACCCACTACAGAGACTGGACATTCTACAGCCCTGGAG
AAGACTACAGCTCCTCGTCCAGACCGGGTTCAGACTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCAC
CTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAGTCTGAAAGTTACACCCAAAATAAGGCTTTAAC
TGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATGTGAGCTCTGTACCTGCGGAGATGAGATG
TTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGCCTGTGCCAGAGCCCAACACCCACA
ATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATTGATGGAAATGTATGGAAAGC
ATACAGTTGGACTGAGAAACTAATTCTCAGAGAAAATAACTTGACTGAATTACACAAGGATTCATTTGAA
GGCCTGCTATCCCTCCAGTATTTAGATTTATCCTGCAATAAAATACAGTCTATTGAAAGACATACATTTG
AACCACTACCATTTTTGAAGTTTATAAATCTTAGTTGCAATGTAATTACAGAACTCAGCTTTGGAACATT
TCAGGCCTGGCACGGAATGCAGTTTTTACATAAGTTAATTCTCAATCACAATCCTCTGACAACTGTTGAA
GATCCGTATCTCTTTAAATTGCCAGCATTAAAATATCTAGACATGGGAACAACGCTAGTCCCACTTACAA
CACTTAAGAACATTCTCATGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTG
CCTCTGCCAATTTAAAAACAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGT
CTGACAAACACCACACATTGTCCTGAAGAAGCATCGGTAGGGAATCCAGAAGGAGCGTTCATGAAGGTGT
TACAAGCCCGGAAGAACTACACAAGCACTGAGCTGATTGTTGAGCCAGAGGAGCCCTCAGACAGCAGTGG
CATCAACTTGTCAGGCTTTGGGAGTGAGCAGCTAGACACCAATGACGAGAGTGATTTTATCAGTACACTA
AGTTACATCTTGCCTTATTTCTCAGCGGTAAACCTAGATGTGAAATCACTGTTACTACCGTTCATTAAAC
TGCCAACCACAGGAAACAGCCTGGCAAAGATTCAAACTGTAGGCCAAAACCGGCAGAGAGTGAAGAGAGT
CCTCATGGGCCCAAGGAGCATCCAGAAAAGGCACTTCAAAGAGGTAGGAAGGCAGAGCATCAGGAGGGAA
CAGGGTGCCCAGGCATCTGTGGAGAACGCTGCCGAAGAAAAAAGGCTCACGAGTCCAGCCCCAAGGGAGG
TGGAACAGCCCCACACACAGCAGGGGCCTGAGAAGTTAGCGGGAAACGCCGTCTACACCAAGCCTTCGTT
CACCCAAGAGCATAAGGCAGCAGTCTCTGTGCTGAAACCCTTCTCCAAGGGCACGCCTTCTACCTCCAGC
CCTGCAAAAGCCCTACCACAGGTGAGAGACAGATCGAAAGACTTAACCCACGCTATTTCCATTTTAGAAA
GTGCAAAGGCTAGAGTTACAAATACGAAGACGTCTAAACCAATCGTACATGCCAGAAAAAAATACCGCTT
TCACAAAACTCGCTCCCACGTGACCCACAGAACAACCAAAGTCAAAAAGAGTCCAAAGGTCAGAAAGAAA
AGTTATCTGAGTAGACTGATGCTCGCAAACAGGCTTCCATTCTCTGCAGCGAAGAGCCTCATAAATTCCC
CTTCACAAGGGGCTTTTTCATCCTTAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCTGGAAGTATCTGC
TCTTTCAGAACATTTTATAGAGAAGAATAATACAAAACACACAACTGCAAGAAATGCCTTTGAAGAAAAT
GATTTTATGGAAAACACTAACATGCCAGAAGGAACCATCTCTGAAAACACAAACTACAATCATCCTCCTG
AGGCAGATTCCGCTGGGACTGCATTCAACTTAGGGCCAACTGTTAAACAAACTGAGACAAAATGGGAATA
CAACAACGTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAATTACCCATTGCTCTCGTCCCCAGGT
GATCAGTTTGAAATTCAGCTAACCCAGCAGCTACAGTCCCTTATCCCCAACAACAATGTGAGAAGGCTCA
TTGCTCATGTTATCCGGACCTTGAAGATGGACTGCTCTGGGGCCCATGTGCAAGTGACCTGTGCCAAGCT
CATCTCCAGGACAGGCCACCTGATGAAGCTTCTCAGTGGGCAGCAGGAAGTAAAGGCATCCAAGATAGAA
TGGGATACGGACCAATGGAAGATTGAGAACTACATTAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAG
AGAAGTCGCTTGAGCTCAAAAAAGAAGTTCCAGGATATGGCTATACTGACAAACTCATCTTGGCATTAAT
TGTTACTGGAATACTAACGATTTTGATTATACTTTTCTGCCTCATTGTGATATGTTGTCACCGAAGGTCA
TTACAAGAAGATGAAGAAGGATTCTCAAGGGGCATTTTCAGATTTCTGCCATGGAGGGGATGCTCTTCGC
GAAGGGAGAGTCAGGATGGACTTTCCTCATTTGGACAGCCGCTCTGGTTTAAAGATCTGTACAAACCTCT
CAGTGCCACAAGAATAAATAATCATGCATGGAAGCTGCACAAGAAGTCATCTAATGAGGACAAGATCCTC
AACAGGGACCCTGGGGACAGCGAAGCCCCAACGGAGGAGGAGGAGAGTGAAGCCCTGCCATAG

Translation (1700 aa):
MSSAQCPALVCVMSRLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPESWSSHSSHFPRE
SPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGEQPLEPEQFLASQQDLKDKLSPQ
ERLPVSPKKLKKDPAQRWSLAEIIGITRQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPS
EQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEV
SVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPP
MEHELSISEQQQPVQPSESPREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLT
IAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNEN
PSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESKTE
VELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTP
PKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTL
PPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQPPDLGLAIIPEPTTETGHSTALE
KTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEM
LSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFE
GLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVE
DPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLILPSHMACCLCQFKNSIEAVCKTVKLHCNSAC
LTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIVEPEEPSDSSGINLSGFGSEQLDTNDESDFISTL
SYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGQNRQRVKRVLMGPRSIQKRHFKEVGRQSIRRE
QGAQASVENAAEEKRLTSPAPREVEQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGTPSTSS
PAKALPQVRDRSKDLTHAISILESAKARVTNTKTSKPIVHARKKYRFHKTRSHVTHRTTKVKKSPKVRKK
SYLSRLMLANRLPFSAAKSLINSPSQGAFSSLGDLSPQENPFLEVSALSEHFIEKNNTKHTTARNAFEEN
DFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPG
DQFEIQLTQQLQSLIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLISRTGHLMKLLSGQQEVKASKIE
WDTDQWKIENYINESTEAQSEQKEKSLELKKEVPGYGYTDKLILALIVTGILTILIILFCLIVICCHRRS
LQEDEEGFSRGIFRFLPWRGCSSRRESQDGLSSFGQPLWFKDLYKPLSATRINNHAWKLHKKSSNEDKIL
NRDPGDSEAPTEEEESEALP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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