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Report for CCDS56782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56782.1 Public Mus musculus 11 Ncor1 23 108 98 CCDS HistoryNCBI Gene:20185Re-query CCDS DB by CCDS ID:56782.1Re-query CCDS DB by GeneID:20185See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069456.10 ENSMUSP00000068974.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069456.10Link to Ensembl Protein Viewer:ENSMUSP00000068974.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069456Re-query CCDS DB by Protein ID:ENSMUSP00000068974
Original member Current member NCBI NM_177229.3 NP_796203.1 Accepted alive Link to Nucleotide Sequence:NM_177229.3Link to Protein Sequence:NP_796203.1Re-query CCDS DB by Nucleotide ID:NM_177229Re-query CCDS DB by Protein ID:NP_796203Link to BLAST:NP_796203.1

Chromosomal Locations for CCDS 56782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 62403432 62403462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62403799 62403851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62404410 62404466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62410820 62410933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62419598 62419780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62422875 62423067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62433563 62433699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 62438338 62438445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGTCAAGTTCAGGTTACCCTCCCAACCAAGGAGCTTTCAGCACAGAGCAAAGTCGTTATCCTTCACATT
CTGTCCAGTATACCTTTCCCAGTACCCGACACCAGCAGGAATTTGCAGTTCCTGACTACCGCTCTTCTCA
TATTGAAGTTAGCCAGGCATCACAGCTTTTACAGCAGCAGCAGCAGCAGCAGCAGCTTCGAAGACGACCT
TCCTTGCTTTCAGAATTTCACCCGGGTTCTGACAGGCCTCAAGAAAGGAGAACTGGATATGAACAGTTTC
ACTCAGGACCCTCACCGGTGGATCATGATTCCTTGGAGTCCAAGCGCCCACGCCTGGAGCCAGTTTCTGA
TGCCCATTTCCAGCGTGTTAGTGCTGCGGTTTTACCTTTAGTTCACTCGCTGCCAGAAGGCTTGAGGTCG
TCTGCAGATGCTAAGAAGGATTCAGCATTTGGAAGCAAACATGAAGCTCCATCCTCTCCTTTGGCTGGGC
AACCATGTGGAGATGACCAAAATGCTTCACCTTCAAAGCTTTCAAAGGAGGAGTTAATACAGAGTATGGA
CCGGGTAGACCGAGAGATTGCAAAAGTAGAGCAGCAGATCCTTAAATTGAAAAAGAAACAACAACAGCTA
GAAGAAGAAGCAGCTAAGCCCCCTGAACCAGAGAAGCCTGTGTCCCCTCCTCCTGTGGAACAAAAACACC
GTAGTATTGTCCAAATTATTTATGATGAGAATCGGAAAAAAGCAGAAGAAGCTCATAAAATATTTGAAGG
TCTTGGCCCAAAAGTTGAACTGCCACTCTATAACCAGCCATCAGATACCAAGGTGTACCATGAGAACATC
AAGACTGGAGTACCTGCAAGGCGCATGATGAAGTAA

Translation (291 aa):
MSSSGYPPNQGAFSTEQSRYPSHSVQYTFPSTRHQQEFAVPDYRSSHIEVSQASQLLQQQQQQQQLRRRP
SLLSEFHPGSDRPQERRTGYEQFHSGPSPVDHDSLESKRPRLEPVSDAHFQRVSAAVLPLVHSLPEGLRS
SADAKKDSAFGSKHEAPSSPLAGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQL
EEEAAKPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHENI
KTGVPARRMMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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