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Report for CCDS37825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37825.1 Public Mus musculus 18 Prrc1 23 108 98 CCDS HistoryNCBI Gene:73137Re-query CCDS DB by CCDS ID:37825.1Re-query CCDS DB by GeneID:73137See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025490.9 ENSMUSP00000025490.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025490.9Link to Ensembl Protein Viewer:ENSMUSP00000025490.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025490Re-query CCDS DB by Protein ID:ENSMUSP00000025490
Original member Current member NCBI NM_028447.3 NP_082723.2 Accepted alive Link to Nucleotide Sequence:NM_028447.3Link to Protein Sequence:NP_082723.2Re-query CCDS DB by Nucleotide ID:NM_028447Re-query CCDS DB by Protein ID:NP_082723Link to BLAST:NP_082723.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082723.2 443 Q3UPH1 443 100% 0 0

Chromosomal Locations for CCDS 37825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 57362453 57362549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57363076 57363465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57365189 57365349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57371367 57371469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57374527 57374690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57381628 57381731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57384174 57384276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 57389220 57389429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGATGGAAGAAAGTGGAATCGAGACCACGCCGCCTGGAACCCCTCCCCTGCATCCTGCAGGCTTGGCTG
CCGTGCCCTCCACTGAAGCTCACTCAGCTGCAACCAGTTCCTTCTCGTCTCCCAACGTGTCGGGAATGGA
GTCTCTGCCCCCACACGTGTATTCCACGCCTCAGCCCTCCCTGCCCCCTGTGCAGCCGTCCGCGCCACCT
CCCTTTGTGTCGATGTCTCCGGCTCCTTCCGTTCCCCTGAGTGGCACTTCTGTGCCGCCCTCCGTGTCTC
CATCGCCTGCCACTGCCTTCAGCGGCCCTCCGATGTCCCACTTCCCGCCTGCGACCTCTGCCTCGGGTGC
TCTCCTGTCTGCACCGCCTTCAGGGCCTCCGATATCAGGGTTTTCTGTCGGTACAACCTACGACATCACG
AGGGGACATGCTGGGAGGGCGCCCCAGACACCTCTGATGCCGTCATTTTCTGCACCTCCGGTTACAGGTA
TCTTGCCAGCCCCCATTACTCAGCAAGCCAGCATGACGTCTCTGGCCCAGGGACCTGGAACCACATCAGC
CATTACTTTCCCGGAGGAACAGGAAGATCCCAGAATTAACAGAGGCCAGGATGATGCCCCTGCTGGCGGG
ATCTGGGGTTTTATTAAGGGCGTAGCTGGGAACCCTATGGTGAAATCTGTCCTGGATAAGACCAAGCATT
CTGTAGAAAGCATGATCACCACGCTGGATCCTGGCATGGCTCCATATATCAAATCTGGAGGTGAACTGGA
TATTGTCGTAACCTCAAATAAAGAAGTGAAAGTGGCTGCTGTCCGAGATGCCTTCCAGGAGGTCTTTGGC
TTAGCTGTGGTTGTTGGGGAAGCTGGACAGTCCAATATCGCCCCTCAGCCAGTCGGGTATGCAGCTGGAT
TGAAGGGCGCCCAGGAACGCATCGACAGCCTGAGGAGGTCGGGAGCGATCCACGAGAAACAGACGGCGGT
GTCGGTAGAAAACTTCATTGCTGAGCTGCTGCCTGACAAGTGGTTTGACATCGGCTGCCTGGTGGTTGAA
GACCCTGTGCATGGCATCCGCCTGGAAGCCTTTACCCAAGCCACGCCCGTGCCTTTGGAGTTTGTGCAGC
AGGCGCAAAGCCTGACTCCCCAGGACTACAATCTGAGGTGGTCAGGCCTTCTGGTGACAGTGGGGGAAGT
CCTGGAAAAGAGCTTGCTCAATGTCAGCCGGACTGATTGGCACCTGGCTTTCACTGGCATGTCTCGCCGA
CAGATGATCTACAGTGCAGCCAAGGCCGTGGCGGGCATGTATAAGCAGCGGCTGCCACCCAGGCCCATGT
GA

Translation (443 aa):
MMEESGIETTPPGTPPLHPAGLAAVPSTEAHSAATSSFSSPNVSGMESLPPHVYSTPQPSLPPVQPSAPP
PFVSMSPAPSVPLSGTSVPPSVSPSPATAFSGPPMSHFPPATSASGALLSAPPSGPPISGFSVGTTYDIT
RGHAGRAPQTPLMPSFSAPPVTGILPAPITQQASMTSLAQGPGTTSAITFPEEQEDPRINRGQDDAPAGG
IWGFIKGVAGNPMVKSVLDKTKHSVESMITTLDPGMAPYIKSGGELDIVVTSNKEVKVAAVRDAFQEVFG
LAVVVGEAGQSNIAPQPVGYAAGLKGAQERIDSLRRSGAIHEKQTAVSVENFIAELLPDKWFDIGCLVVE
DPVHGIRLEAFTQATPVPLEFVQQAQSLTPQDYNLRWSGLLVTVGEVLEKSLLNVSRTDWHLAFTGMSRR
QMIYSAAKAVAGMYKQRLPPRPM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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