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Report for CCDS56594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56594.1 Public Homo sapiens 9 TPRN 24 110 108 CCDS HistoryNCBI Gene:286262Re-query CCDS DB by CCDS ID:56594.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56594.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409012.6 ENSP00000387100.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409012.6Link to Ensembl Protein Viewer:ENSP00000387100.4Re-query CCDS DB by Nucleotide ID:ENST00000409012Re-query CCDS DB by Protein ID:ENSP00000387100
Original member Current member NCBI NM_001128228.3 NP_001121700.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128228.3Link to Protein Sequence:NP_001121700.2Re-query CCDS DB by Nucleotide ID:NM_001128228Re-query CCDS DB by Protein ID:NP_001121700Link to BLAST:NP_001121700.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121700.2 711 Q4KMQ1-1 711 100% 0 0

Chromosomal Locations for CCDS 56594.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 137192112 137192174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137192259 137192365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137192451 137192691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 137198987 137200711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGCCGCCCTGGGGCGGCCGGGCTCGGGGCCGCGCGCTGCGGTGCCCGCTTGGAAGCGTGAGATCCTGG
AGCGGAAGCGGGCCAAGCTAGCCGCGCTGGGCGGGGGCGCGGGGCCCGGGGCGGCGGAGCCCGAGCAGCG
GGTGCTGGCCGAGAGCCTGGGCCCGCTGCGCGAGAACCCGTTCATGCTGCTGGAGGCCGAGCGGCGGCGC
GGCGGGGGCGCGGCGGGGGCGCGGCTGCTGGAGCGGTACCGCCGCGTGCCTGGCGTGCGCGCCCTCCGCG
CCGACAGCGTCCTCATCATCGAGACGGTGCCCGGCTTCCCGCCCGCGCCGCCCGCCCCGGGGGCCGCGCA
GATCCGCGCCGCCGAGGTGCTGGTGTACGGGGCGCCGCCCGGCCGCGTCAGCCGCCTACTGGAGAGGTTC
GACCCGCCCGCCGCGCCGCGCCGCCGCGGGAGCCCCGAGCGCGCCCGCCCCCCGCCGCCGCCGCCGCCGC
CCGCGCCGCCCCGGCCCCCGCCCGCGGCCCCCAGCCCGCCCGCCGCGCCCGGGCCCCGCGGTGGCGGGGC
GAGCCCCGGGGCCCGGCGCAGCGACTTCCTCCAGAAGACCGGCAGCAACTCCTTCACCGTCCACCCCCGG
GGTCTGCACCGCGGCGCGGGCGCCCGCCTGCTCTCCAACGGGCACTCGGCCCCTGAGCCCCGGGCCGGCC
CTGCCAACCGCCTCGCGGGCTCCCCGCCTGGGTCGGGACAGTGGAAGCCAAAGGTGGAGTCGGGGGATCC
CTCCCTCCACCCGCCCCCCAGCCCCGGGACCCCGAGTGCCACTCCAGCCTCACCCCCTGCCAGTGCCACT
CCTAGCCAGCGCCAGTGCGTCTCCGCAGCCACCAGCACCAACGACTCCTTCGAGATACGGCCGGCCCCCA
AGCCAGTTATGGAGACCATCCCCTTGGGGGACCTCCAGGCCCGGGCGCTGGCCAGCCTCCGCGCAAACTC
TCGAAATTCTTTCATGGTCATCCCCAAGAGCAAGGCCTCCGGGGCTCCTCCTCCTGAGGGGAGGCAGTCC
GTGGAGCTGCCAAAGGGAGACCTGGGCCCGGCCTCCCCGAGCCAGGAGCTCGGATCCCAGCCGGTGCCTG
GAGGGGATGGTGCGCCTGCCCTCGGGAAGAGCCCCCTGGAGGTCGAGGCACAGTGGGCAGTCGAGGAGGG
GGCCTGTCCCAGGACAGCCACCGCCCTCGCTGACCGGGCTATTAGGTGGCAGAGGCCGTCCTCACCGCCC
CCCTTCCTGCCGGCTGCTTCGGAAGAAGCTGAGCCTGCTGAGGGCCTCAGGGTTCCTGGCTTGGCCAAGA
ATAGCCGGGAATATGTGAGGCCGGGGCTGCCTGTCACCTTCATCGATGAGGTAGACTCGGAGGAGGCCCC
CCAAGCAGCCAAACTACCCTACCTCCCGCACCCTGCCAGGCCTCTGCACCCTGCCAGGCCCGGGTGCGTG
GCAGAGCTTCAGCCCCGGGGCAGCAACACCTTCACAGTGGTGCCCAAGAGGAAGCCAGGGACTCTGCAGG
ACCAGCACTTCAGTCAGGCCAACAGGGAGCCTCGGCCACGGGAGGCCGAGGAGGAGGAGGCTAGTTGCCT
CCTGGGGCCCACGTTGAAGAAGCGCTACCCCACCGTGCATGAGATCGAGGTGATTGGCGGCTACCTGGCC
CTGCAGAAGTCCTGCCTCACCAAGGCTGGCTCCTCAAGAAAGAAGATGAAGATCTCCTTCAACGACAAAA
GCCTGCAGACCACATTTGAGTACCCTTCCGAGAGCTCCCTAGAGCAGGAGGAAGAGGTGGACCAGCAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGAGGGATCCGGCTCAGAGGAGAAGCCCTTT
GCACTCTTCCTGCCCCGGGCCACGTTTGTGAGCAGCGTGAGACCCGAGAGCTCTCGGCTGCCAGAGGGTA
GCTCAGGCCTGTCCAGCTACACCCCGAAGCACTCTGTGGCCTTCAGCAAGTGGCAGGAGCAGGCGCTGGA
GCAGGCCCCGAGGGAGGCAGAGCCCCCGCCCGTGGAGGCCATGCTCACACCCGCCAGTCAGAATGACCTC
TCGGACTTCCGCAGCGAGCCAGCCCTGTATTTCTGA

Translation (711 aa):
MAALGRPGSGPRAAVPAWKREILERKRAKLAALGGGAGPGAAEPEQRVLAESLGPLRENPFMLLEAERRR
GGGAAGARLLERYRRVPGVRALRADSVLIIETVPGFPPAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERF
DPPAAPRRRGSPERARPPPPPPPPAPPRPPPAAPSPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPR
GLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPSPGTPSATPASPPASAT
PSQRQCVSAATSTNDSFEIRPAPKPVMETIPLGDLQARALASLRANSRNSFMVIPKSKASGAPPPEGRQS
VELPKGDLGPASPSQELGSQPVPGGDGAPALGKSPLEVEAQWAVEEGACPRTATALADRAIRWQRPSSPP
PFLPAASEEAEPAEGLRVPGLAKNSREYVRPGLPVTFIDEVDSEEAPQAAKLPYLPHPARPLHPARPGCV
AELQPRGSNTFTVVPKRKPGTLQDQHFSQANREPRPREAEEEEASCLLGPTLKKRYPTVHEIEVIGGYLA
LQKSCLTKAGSSRKKMKISFNDKSLQTTFEYPSESSLEQEEEVDQQEEEEEEEEEEEEEEEGSGSEEKPF
ALFLPRATFVSSVRPESSRLPEGSSGLSSYTPKHSVAFSKWQEQALEQAPREAEPPPVEAMLTPASQNDL
SDFRSEPALYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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