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Report for CCDS5978.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5978.2 Public Homo sapiens 8 XKR6 24 110 108 CCDS HistoryNCBI Gene:286046Re-query CCDS DB by CCDS ID:5978.2See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5978.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416569.3 ENSP00000416707.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416569.3Link to Ensembl Protein Viewer:ENSP00000416707.2Re-query CCDS DB by Nucleotide ID:ENST00000416569Re-query CCDS DB by Protein ID:ENSP00000416707
Original member Current member NCBI NM_173683.4 NP_775954.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173683.4Link to Protein Sequence:NP_775954.2Re-query CCDS DB by Nucleotide ID:NM_173683Re-query CCDS DB by Protein ID:NP_775954Link to BLAST:NP_775954.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775954.2 641 Q5GH73-1 641 100% 0 0

Chromosomal Locations for CCDS 5978.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 10897952 10898916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10924634 10924830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 11200576 11201339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGCGGCGAAATCCGATGGCGGTGGCGTGGGGGTGGGCTTCGCTCAGCTGCACAACCTGGACGAGGCGG
TGGGCAGCGGCGGCGAGGAGGACGGGGAGCCCGGGGGAGGCGGCTGCGGCGGCGGCGGCGACGGCAGCGA
GCCCGGCGAGAGCAGCTCGATGCACATCTGCCACTGCTGCAACACCTCCTCGTGCTACTGGGGCTGCCGC
TCCGCCTGCCTGCGCTCCCTCCTGGGCAGGAAGCCGCGCCGCAGCGCCGCCGCCGACGGGGGGGACCAGC
CGCTGCAGCCTCCCGCGGCCCCCGGCGCCGGCCGCCAACCCCCGACGCCCTCGGCCGCGCGGCCGGAGCC
GCCGCCGCCGCAGGTGGAGCGGCCGTGGCTCGACTGCCTGTGGATCGTGCTGGCGCTGCTGGTGTTCTTC
GGGGACGTGGGCACCGACCTGTGGCTGGCCCTCGACTACTACCGCAAGGGGGACTACGTCTACTTCGGGC
TGACCCTCTTCTTCGTGCTGGTGCCGTCGCTGCTGGTGCAGAGCCTGAGCTTCCGCTGGTTCGTGCAGGA
CTACACGGGCGGCGGGCTGGGCGCCGTGGAGGGGCTCACCAGCCGGGGCCCCCCCATGATGGGGGCCGGC
TACGTCCACGGCGCGGCCCGCGGTGGCCCAGGCGTGAGGGTCTCCCCCACGCCGGGGGCGCAGCGCCTGT
GTCGCCTCTCCGTGTGGATCTGGCAGTCGGTCATCCACCTGCTGCAGATGGGGCAGGTGTGGAGGTATAT
CCGCACCATGTACCTGGGGATTCAGAGCCAGCGGCGGAAGGAACACCAGCGACGCTTCTACTGGGCTATG
ATGTATGAATATGCAGACGTCAACATGCTGCGCCTCCTGGAGACCTTCCTGGAGAGCGCGCCCCAACTGG
TGCTACAGCTCTACATCATGCTCCAGAAGAACAGCGCCGAGACCCTGCCCTGTGTCTCCTCTGTGACTTC
CCTGATGTCCCTGGCTTGGGTGCTAGCCTCCTATCACAAGCTGCTGCGGGACTCCAGGGACGACAAGAAG
AGCATGAGCTACAGAGGGGCCATCATCCAGGTCTTCTGGCGCCTCTTCACCATCTCATCCCGAGTGATCT
CTTTTGCCCTCTTTGCTTCCATCTTCCAGCTCTATTTTGGGATCTTCGTGGTGGTTCACTGGTGCGCCAT
GGCCTTCTGGATCATCCATGGCGGAACAGACTTCTGCATGTCCAAGTGGGAGGAGATCCTCTTCAACATG
GTGGTAGGGATCGTGTACATTTTCTGCTGGTTTAACGTCAAGGAAGGGCGGACTCGATATCGAATGTTTG
CATATTATACGATAGTCTTGACCGAGAATGCTGCCTTGACGTTCCTTTGGTATTTTTACAGAGACCCGGA
GACCACTGACTCCTATGCGGTGCCAGCACTGTGTTGTGTCTTTATTAGCTTTGTGGCTGGGATCGCAATG
ATGCTCTTATACTATGGCGTGCTGCATCCCACAGGACCACGAGCTAAGATCCTTGCCAGCTCCTGTTGTG
CCGAGCTGCTCTGGGGCATCCCTTTGCCCCCCGATGTTGAGCCCATGGCGCCTGAGATCCCTGGGTACCG
GGGGACCCAGGTTACGCCCACCAGAGCCGTAACGGAACAACAGGAGGATCTCACGGCTGACACTTGCTTG
CCTGTTTTCCAAGTGAGACCCATGGGGCCCCCTACCCCGTTGGGGCGTCCTTACCTCCCAGAAGGGCCCC
TCATTAAGATTGACATGCCAAGAAAGCGATACCCAGCTTGGGATGCTCATTTTGTAGACAGGAGGCTGAG
AAGGACTATTAACATTCTACAATATGTCACCCCCACCGCAGTAGGCATTCGATATCGAGACGGACCACTC
CTCTATGAGTTGCTACAGTATGAGTCTTCACTCTAA

Translation (641 aa):
MAAKSDGGGVGVGFAQLHNLDEAVGSGGEEDGEPGGGGCGGGGDGSEPGESSSMHICHCCNTSSCYWGCR
SACLRSLLGRKPRRSAAADGGDQPLQPPAAPGAGRQPPTPSAARPEPPPPQVERPWLDCLWIVLALLVFF
GDVGTDLWLALDYYRKGDYVYFGLTLFFVLVPSLLVQSLSFRWFVQDYTGGGLGAVEGLTSRGPPMMGAG
YVHGAARGGPGVRVSPTPGAQRLCRLSVWIWQSVIHLLQMGQVWRYIRTMYLGIQSQRRKEHQRRFYWAM
MYEYADVNMLRLLETFLESAPQLVLQLYIMLQKNSAETLPCVSSVTSLMSLAWVLASYHKLLRDSRDDKK
SMSYRGAIIQVFWRLFTISSRVISFALFASIFQLYFGIFVVVHWCAMAFWIIHGGTDFCMSKWEEILFNM
VVGIVYIFCWFNVKEGRTRYRMFAYYTIVLTENAALTFLWYFYRDPETTDSYAVPALCCVFISFVAGIAM
MLLYYGVLHPTGPRAKILASSCCAELLWGIPLPPDVEPMAPEIPGYRGTQVTPTRAVTEQQEDLTADTCL
PVFQVRPMGPPTPLGRPYLPEGPLIKIDMPRKRYPAWDAHFVDRRLRRTINILQYVTPTAVGIRYRDGPL
LYELLQYESSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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