NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS87246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87246.1 Public Homo sapiens 4 C4orf54 24 110 108 CCDS HistoryNCBI Gene:285556Re-query CCDS DB by CCDS ID:87246.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511828.2 ENSP00000427555.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000511828.2Link to Ensembl Protein Viewer:ENSP00000427555.1Re-query CCDS DB by Nucleotide ID:ENST00000511828Re-query CCDS DB by Protein ID:ENSP00000427555
Original member Current member NCBI NM_001354435.2 NP_001341364.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354435.2Link to Protein Sequence:NP_001341364.1Re-query CCDS DB by Nucleotide ID:NM_001354435Re-query CCDS DB by Protein ID:NP_001341364Link to BLAST:NP_001341364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341364.1 1793 D6RIA3 1793 100% 0 0

Chromosomal Locations for CCDS 87246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99649267 99654648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5382 nt):
ATGCTTTCCTTTCATTTCTGGAAGTCCCGGGGTCAACCTACAGATGCTGCTTCTTCCGTGGCCGATGGCA
TTCAGACTCCTCGCTGCTGCCGACGGTGCCAGGCAAACAACTGGACAGGACAGCTCAGCTACAGAACACT
GGCCACAGTCTCGGCCGGAGCAGCAGCCCCCCAGCCACAGACCACCTCCACCGCCTCATCCAGGAGCCTT
CCCACCTCCCTCAGGCTTGCTGCGGCCCCGCCACAGGGGCTGAAGAACTGGGAGGTGGTGGCAGCAGTGG
CAGCAGTGCCTACAGCCTTGGGGCCAGTCCAGATACGTGGGACCCTGCTTCGGGCAACTCTGCAGCCCCT
CCGGGGCCAGAGACGGACCCAAGACTTCCCCAGCGATCACCATTGTCTCTTCCTGTCGCTGAAACCTGGG
CAAGGGCTCATAATGGAAGCTGCCCCTCCTGAGCTGAATTCGAAAGCAAGACAGGCGGAGGTGGGGGACG
GGGTGAGCAGTGCTCAAGACAGCCAGGAGCTCAAGCAGCAGCTGTGGCCACTTCCCAAGCCTTCAGCCTC
CTCCCAGCGAGAAGCGAAATATGTGGACATGTGTGCTTCAGCTGAAGTCCAGAGGGAGAGTCCCCAGACC
ATGAAACTTACCCTGGGGCACTGCCCTGGGGGTCAGAGGGCCTCTAGGAGCCCAAAGGAGAAAGCCCAAG
ATGAACCCAGCAGCAAGACTCCAAGCCCCCAGAACAATCCTGCCTCCTCCCAACTCTCTAGATCCCAGCA
CTCTGCCTCTGAAGAGGGTGGCAATTTCTCATCTTCCTCATCCTCCTCCCCGATGAACAAAGCAGAAGAG
GATGGCCTTTCCAAAATGGAGGACTCCACCACATCCACAGGGGCTCTGGCCACCTCCTCTTCATCCTTAG
GCTTCGAGAGTGAGAGTGGTGAAAGTGAAGGTTGCCAGGCCGTGGGAGGAGAAGGAGAGAAAATATCAGG
AGGAGGGGGAGGAGGAAAAGGAGGAGGGGGAGGAGGGGCAGGAGATGGAACAGAGTGCAGGGACATTATT
GCCAAGTCCCAGGGCAGCAGGGACCCCCCCAAAGTCGAAGAGGCTCACTACATCACCACCCATGAGATCC
AGCTGAGTGAGGTGGAACAGGACATGGATTTCGACGTGGGACTGGCCTCCCGCTGGGATTTCGAGGACAA
CAACGTGATCTACTCGTTCGTGGATTATGCTTCCTTTGGTGGCAGCGACGAGACCCCAGGGGACATCACC
AGTCTGACCGAAGAGGACGACGACAACAGCTGCTACCTCAGCACCACTCCCAGCACCAACACCACCCGGA
CGCCCAGCCCTACAAGCAGCGACCTGGCCCGCCCCAATGCAGGCCGCAGTGGCCGCGACACCAGCAGCAC
CGAAGTGGGCAGTGGCCCCTCTGACAGTGGCCCCACTCCCCCACCCACTGGGCCTGGCACTGCCCCCCTG
ACTGAGCCCTTGCCTGAGACCCCGGAGGCAGCTTCAGGGGCAGCAGCCGCCGCCGCAAGCAGCTGTGGGA
GTGCAGCAAGCCAGATCCTCCTATCAATCAAACCGGCTTCCCGGGCTATAAATGAGCCTAGCAACGTGCG
TGCAAAGCAAAACATTATTTATGCTGCCAAGCATGAAGGCGACATGAGCCTCCGCGTCTCTACAGCTGCT
GAACACAATTCAAGTTCGCTGAAGCAAAACCCGGCTGCAGCAGTGGCTCAGGACCATGCAAAGAAATTCA
TTGCTGTACCTGCTCGCCTGCAAACCAGGTGCGGGGCCATCCGGGCGAAGGAGCTGGTGGACTACTCCAG
CGGAGCCTCCAGTGCCGTGAGCGAACTGGACGATGCGGACAAAGAGGTGCGTAACCTGACCTCCCGGGCC
TTCCGGAGCCTGGCTTACCCCTACTTTGAGGCTCTGAACATCAGCTCCCGGGAGTCCTCCACCACGCTCT
CCGAAGTGGGCTTTGGGCGCTGGTCAACTTTCCTGGACTTAAAATGTGGGGGTGTTGGGGCCAGGGTGGA
GCAGAGCCTCCTCAGGAGCAGCGCGGCCTCTGTGGCTGCAGGTCTGAGGAAGGGCAGTGGGGCCCGGGCC
ACTGCCGACCAGCTCTACATCCAGTCCAAGAAGTCTCAGACCAAGGCCTTGGAGTTCGTGGTCAGCAAAG
TCGAGGGGGAAATCAAACATGTGGAGACGCCCCTGTGTTTCCAGAAGCAGGTCCAGACGGGCTCCCGCGT
CGTCACCCTTTTGGAGCCCCTGAATGTACGCAGTGAGAGCAAAGCCAGCTCGGCCCCTGGGCCCGGCAGG
GCCACCAAAGGCCCCGGCAAGGGTCCCGGGTCGGCATACACGGACGACGGCTCCGAGACCTCCGAGGGCA
GCAAGCCCACCTCCCGCGCCGATGGCCCCCAGAAGTCCAAGTTCGCCTCCAGTCTGCTCAAAAATGTCAT
TTCCAAGAAGATGCAGCGGGAACACGAGTTCAAAATGGAGAGGGGAGAAGTCATGGATACATCCCACCAC
CTCTCAGGCACCTCCAAGGAGACGGAGGGCGCCCGCGGGAGCGAGAGGCAGCGAGAGAGGGGCCTGCAGA
GGCAGAGCTCTCGTCACTCCGAGGCCGGCTCCGAGTACACAGTGGTCAGCATGTCCGACGCGGGCGGGGA
GGGGTCCGTGGCGGGCTCCAAATCTCCAGTCTTCAAAGCCAGTACTCCTCGCGAGCGCAACGCAGGCCCT
GGCCGGAATTTCACCGATGGACACACAGAAGTGTGTGAAATTAAAAAGAGTGCCTCAGAGACCGTCAAGG
GCATCTTCCTCCGTAGTCAGAACAGTGCGTTCCGGTCATGGAAGGAGAAAGAGGCCGAGAAGAGGGAGGA
ACAAGCCCCTATAGGGAAGCTGAAGCTGCCCAAAGGAGGCGACTGGCGGGCTGATCTCGGGGAGATTTCT
GCCAGCAAGAACACCATCATGTCTCGCCTCTTTGTCCCCAACATCCAGCAGACACCCAAGGACAAGCAGC
CGAGGAAGCAGGCCACCAAGTACCCTGCTGCTCAGGCCACCTCCACAGCGGTGATCAGACCCAAGGCTCC
CGAAATCAAGATCCGGCTGGGGAGTGTGCAGCAGCCGAGCTCAGACTTCAACATTGCCAAGTTGCTCACG
CCCAAGCTGGCCGGTGGCAGCGCCTCTAACCTGTTCAAGACCATCGAGGACAACAGCAGGGCACAGCAGA
AACTCTTCCGCGGGGACAACCTAGAAAAAGTGCCCCATTTCCAGGTGAGAGACATCAGAGACAAGTCCAA
GGCTCAAGGCCCCCTCCACCAGGTGAGAGATGTCAGGAAACTAATTAAAGGGTCAGGGGATAGTAGTGAC
AAGGGCAGTGTTACCCCAGAGCAGGGGCTGACTGGACCCAAACCCAGGCAGCTGTCTGCAGCAGCTGGCG
GATCTGGATCCCTGTCCCCCATGGTGATTACATGCCAGGCTGTAGTGAACCAGAGGGAAGACAGCATGGA
CCGAGAGCCCAGGGAAAGCATGGGCAAAGGGGGCGGCAGCAGAGTCTTGAATTCTTCCTCCCCAGAAGGG
ACAGTCTTGGTTCACAGGGCATCTGGCAGGCTGCCTGTGGCTACCATTGCCCCCAATAAGCCCGAGCAGG
GCTCATACCTGCCTGTGCTCAAGATTGTCTCCAAGGCTTCCACCCAGAAGACCCCAGAGAAGCTCAAGGA
GGAGGAGGTCAAGGAGGAAGGGAAAGCCACGAAGCCAGCCCGGAATGCCCTGGAGAAGCTGACTGCAGCC
GTGAGGTCCATGGAAGAGCTGTACAGCTTCAACAGGAACGAGTGGAAGCGCAAAAGCGACCCCTTGCCTA
TGATGATGGACAGCCACGTGCTGTCGCTCATTGCCAGTGAGGAGAGGGAAGGGGTAGTGGTTGCTGATGG
AGACCACGACAAGCTGTCCAAACGGCTGGGTGAGGTGGAAGAGCGGGGCACAGGAAACAAAGCTGGTGTG
GTCCTGCGAGGGGCCCCCATAGAACGTCTGCAGCGGAGAAACTCCAACCCCAGCGCTGAGAGTGTGTCTG
CCAGGGCAGCGGCCTTTGAGAACCTGGCCAGGGAAAGACCCCGATCTCTCTATATTCCCCCAGTCCACAA
GGATGTAGAGAGAACCCAACCCCTGCAGCCCCTCCCACCACTCCCCAGCAACCGGAACGTGTTCACAGTG
AGTGCCAGCAGCATCCAGAAAACTGGGGGTGTCGCTGGCAAGTTCCCACAAGGGCCTTCTCCGGAGAGTC
CTTCAGCAGCTAAGGGCATCAAGTCGCAGGGACTCCGGTCCCTCAAGATCTCTCCAGCCACCCGGGCACC
TCCTGATGAGGTGACCAACAGGAAAAGTGGCAGCAATTTGGAGAAGAGCAACAGTGACTGTGAGAATTAC
CTGACCATCCCTCTTAAAGGAAGCTCTGCTGCAGGGGAGCTTCTTAGCAGGCCTGGGGCTTCCAGGGAGG
GGCCCCCCAACTCCTCAGCTGCCACTCTCTGTAGTTTACCCCCGCTGAGTGCCCGCAGTCAGGTCCCCAG
TAGCTCCAAAGGCTCTCAGGTTAGTGGAACCAGCCGACCAGCTTGGCGTACCAAACCTGACAACCCCCGG
GAGACAGTAGCTGCCCCCCCAGGGCCACAGAGCCCCGAGCATCCCCCCACCACCATCTACCACCAGCCGC
CGCTGCCCTTCACCCTACAGGGGGCCCAGCCTCAGGTCCTCTGCTTCTCCCCACCCAGCATGCCTGCCCC
AGCACCTGCAGCCTCAGCTCCCGTCCCCACAGACCCCTTCCAGCAGGCACAGCCTCAACAGACCCAGCGT
AAGATGCTCCTGGATGTGACAACAGGCCAGTACTATCTGGTGGACACACCAGTACAGCCCATGACCCGGA
GACTGTTTGACCCTGAGACAGGGCAGTATGTGGATGTGCCCATGACCTCCCAGCAGCAGGCTGTGGCTCC
CATGTCCATCTCTGTGCCTCCCTTGGCCCTGAGTCCTGGGGCTTATGGACCCACCTACATGATTTACCCT
GGGTTTCTGCCTACCGTGCTGCCCACCAATGCTCTGCAGCCCACACCAATTGCTCGCGCTCCAAGAGGAA
GTGAGCTCTCCCCAATGGTGGCAGAACCTTCCAGCAAAGAGGCAGCTGCAACGTTCACCGAGGCCCCATA
CTTCATGGCTTCTGGTCAGTCTCCGGCCTCCTCAACCTCCTCAGCCCCAGCAGCCACATCCCAGCTCCTA
GGGGCCAAGGCCTTTGCCCAGCTGCATGGCAAGCCTGTCATCAGCATTACTTCGCAGCCCCTGGGGCCAC
GGATCATTGCTCCCCCTTCCTTTGATGGCACCACCATGAGCTTTGTGGTAGAACACAGATGA

Translation (1793 aa):
MLSFHFWKSRGQPTDAASSVADGIQTPRCCRRCQANNWTGQLSYRTLATVSAGAAAPQPQTTSTASSRSL
PTSLRLAAAPPQGLKNWEVVAAVAAVPTALGPVQIRGTLLRATLQPLRGQRRTQDFPSDHHCLFLSLKPG
QGLIMEAAPPELNSKARQAEVGDGVSSAQDSQELKQQLWPLPKPSASSQREAKYVDMCASAEVQRESPQT
MKLTLGHCPGGQRASRSPKEKAQDEPSSKTPSPQNNPASSQLSRSQHSASEEGGNFSSSSSSSPMNKAEE
DGLSKMEDSTTSTGALATSSSSLGFESESGESEGCQAVGGEGEKISGGGGGGKGGGGGGAGDGTECRDII
AKSQGSRDPPKVEEAHYITTHEIQLSEVEQDMDFDVGLASRWDFEDNNVIYSFVDYASFGGSDETPGDIT
SLTEEDDDNSCYLSTTPSTNTTRTPSPTSSDLARPNAGRSGRDTSSTEVGSGPSDSGPTPPPTGPGTAPL
TEPLPETPEAASGAAAAAASSCGSAASQILLSIKPASRAINEPSNVRAKQNIIYAAKHEGDMSLRVSTAA
EHNSSSLKQNPAAAVAQDHAKKFIAVPARLQTRCGAIRAKELVDYSSGASSAVSELDDADKEVRNLTSRA
FRSLAYPYFEALNISSRESSTTLSEVGFGRWSTFLDLKCGGVGARVEQSLLRSSAASVAAGLRKGSGARA
TADQLYIQSKKSQTKALEFVVSKVEGEIKHVETPLCFQKQVQTGSRVVTLLEPLNVRSESKASSAPGPGR
ATKGPGKGPGSAYTDDGSETSEGSKPTSRADGPQKSKFASSLLKNVISKKMQREHEFKMERGEVMDTSHH
LSGTSKETEGARGSERQRERGLQRQSSRHSEAGSEYTVVSMSDAGGEGSVAGSKSPVFKASTPRERNAGP
GRNFTDGHTEVCEIKKSASETVKGIFLRSQNSAFRSWKEKEAEKREEQAPIGKLKLPKGGDWRADLGEIS
ASKNTIMSRLFVPNIQQTPKDKQPRKQATKYPAAQATSTAVIRPKAPEIKIRLGSVQQPSSDFNIAKLLT
PKLAGGSASNLFKTIEDNSRAQQKLFRGDNLEKVPHFQVRDIRDKSKAQGPLHQVRDVRKLIKGSGDSSD
KGSVTPEQGLTGPKPRQLSAAAGGSGSLSPMVITCQAVVNQREDSMDREPRESMGKGGGSRVLNSSSPEG
TVLVHRASGRLPVATIAPNKPEQGSYLPVLKIVSKASTQKTPEKLKEEEVKEEGKATKPARNALEKLTAA
VRSMEELYSFNRNEWKRKSDPLPMMMDSHVLSLIASEEREGVVVADGDHDKLSKRLGEVEERGTGNKAGV
VLRGAPIERLQRRNSNPSAESVSARAAAFENLARERPRSLYIPPVHKDVERTQPLQPLPPLPSNRNVFTV
SASSIQKTGGVAGKFPQGPSPESPSAAKGIKSQGLRSLKISPATRAPPDEVTNRKSGSNLEKSNSDCENY
LTIPLKGSSAAGELLSRPGASREGPPNSSAATLCSLPPLSARSQVPSSSKGSQVSGTSRPAWRTKPDNPR
ETVAAPPGPQSPEHPPTTIYHQPPLPFTLQGAQPQVLCFSPPSMPAPAPAASAPVPTDPFQQAQPQQTQR
KMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPMTSQQQAVAPMSISVPPLALSPGAYGPTYMIYP
GFLPTVLPTNALQPTPIARAPRGSELSPMVAEPSSKEAAATFTEAPYFMASGQSPASSTSSAPAATSQLL
GAKAFAQLHGKPVISITSQPLGPRIIAPPSFDGTTMSFVVEHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH