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Report for CCDS2921.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2921.2 Public Homo sapiens 3 C3orf38 24 110 108 CCDS HistoryNCBI Gene:285237Re-query CCDS DB by CCDS ID:2921.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 2921.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2921.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318887.8 ENSP00000322469.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318887.8Link to Ensembl Protein Viewer:ENSP00000322469.3Re-query CCDS DB by Nucleotide ID:ENST00000318887Re-query CCDS DB by Protein ID:ENSP00000322469
Original member Current member NCBI NM_173824.4 NP_776185.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173824.4Link to Protein Sequence:NP_776185.2Re-query CCDS DB by Nucleotide ID:NM_173824Re-query CCDS DB by Protein ID:NP_776185Link to BLAST:NP_776185.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776185.2 329 Q5JPI3-1 329 100% 0 0

Chromosomal Locations for CCDS 2921.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88150053 88150185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88153230 88153471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88156021 88156635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAGATGTCGGGACTCAGCTTTTCAGAGATGGAGGGCTGCCGTAACCTACTTGGCCTACTGGACAACG
ACGAGATCATGGCCCTATGCGACACTGTCACCAACCGCCTGGTGCAGCCTCAGGACCGCCAAGATGCTGT
TCATGCAATATTAGCATACAGTCAAAGTGCAGAAGAACTTCTGAGGCGTAGAAAAGTCCACCGAGAAGTT
ATATTTAAGTACTTGGCAACACAGGGGATTGTTATACCTCCAGCTACTGAAAAACACAATCTTATTCAGC
ATGCAAAAGATTACTGGCAAAAGCAACCACAACTGAAATTGAAGGAAACGCCAGAGCCAGTTACAAAGAC
AGAGGACATCCACCTATTTCAACAGCAGGTGAAAGAAGATAAAAAAGCTGAAAAAGTTGATTTTCGTCGC
CTAGGAGAAGAATTCTGTCATTGGTTCTTTGGACTTCTTAATTCTCAGAATCCTTTTCTAGGACCACCTC
AAGATGAATGGGGACCACAGCACTTCTGGCATGATGTGAAGCTTAGGTTTTATTACAACACATCAGAACA
AAATGTTATGGACTACCATGGAGCAGAAATCGTGAGCCTTCGTTTGCTGTCACTAGTAAAAGAAGAATTT
CTTTTTCTCAGCCCCAACCTAGATTCACATGGACTGAAATGTGCATCTTCTCCTCATGGGCTGGTTATGG
TTGGAGTTGCTGGGACTGTCCATCGAGGAAACACTTGTTTGGGCATTTTTGAACAAATTTTTGGACTCAT
CCGCTGCCCTTTTGTGGAGAATACTTGGAAAATCAAATTTATCAACCTGAAAATTATGGGAGAGAGTTCC
CTTGCTCCTGGAACATTACCGAAACCATCTGTTAAATTTGAACAAAGTGATCTAGAGGCCTTTTATAATG
TAATCACTGTATGTGGTACCAATGAAGTACGACATAATGTAAAGCAGGCTTCGGATAGTGGAACTGGGGA
CCAAGTTTGA

Translation (329 aa):
MEMSGLSFSEMEGCRNLLGLLDNDEIMALCDTVTNRLVQPQDRQDAVHAILAYSQSAEELLRRRKVHREV
IFKYLATQGIVIPPATEKHNLIQHAKDYWQKQPQLKLKETPEPVTKTEDIHLFQQQVKEDKKAEKVDFRR
LGEEFCHWFFGLLNSQNPFLGPPQDEWGPQHFWHDVKLRFYYNTSEQNVMDYHGAEIVSLRLLSLVKEEF
LFLSPNLDSHGLKCASSPHGLVMVGVAGTVHRGNTCLGIFEQIFGLIRCPFVENTWKIKFINLKIMGESS
LAPGTLPKPSVKFEQSDLEAFYNVITVCGTNEVRHNVKQASDSGTGDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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