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Report for CCDS71348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71348.1 Public Mus musculus 4 Triqk 23 108 98 CCDS HistoryNCBI Gene:208820Re-query CCDS DB by CCDS ID:71348.1Re-query CCDS DB by GeneID:208820See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183345.1 ENSMUSP00000138966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183345.1Link to Ensembl Protein Viewer:ENSMUSP00000138966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183345Re-query CCDS DB by Protein ID:ENSMUSP00000138966
Original member Current member EBI ENSMUST00000143186.7 ENSMUSP00000139205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143186.7Link to Ensembl Protein Viewer:ENSMUSP00000139205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143186Re-query CCDS DB by Protein ID:ENSMUSP00000139205
Original member Current member NCBI NM_001171801.1 NP_001165272.1 Accepted alive Link to Nucleotide Sequence:NM_001171801.1Link to Protein Sequence:NP_001165272.1Re-query CCDS DB by Nucleotide ID:NM_001171801Re-query CCDS DB by Protein ID:NP_001165272Link to BLAST:NP_001165272.1
Original member Current member NCBI NM_173746.3 NP_776107.2 Accepted alive Link to Nucleotide Sequence:NM_173746.3Link to Protein Sequence:NP_776107.2Re-query CCDS DB by Nucleotide ID:NM_173746Re-query CCDS DB by Protein ID:NP_776107Link to BLAST:NP_776107.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165272.1 86 B2B9E1 86 100% 0 0
NP_776107.2 86 B2B9E1 86 100% 0 0

Chromosomal Locations for CCDS 71348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 12962963 12963023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12974730 12974815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12980405 12980518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGGTAGAAAAGACTCTTCCAATACAAAACTTCCTGTTGATCAGTACAGAAAGCAAATAGGTAAACAGG
ATTATAAAAAAACCAAACCTATTTTACGAGCAACCAAATTAAAAGCAGAAGCAAAGAAAACAGCAATAGG
CATAAAGGAAGTTGGCCTCATGCTTGCAGCTATCCTGGCCCTCCTACTGGCTTTCTATGCCTTCTTTTAT
CTCCGACTGTCCACGAATATTGACTCTGATCTGGACCTGGATGAAGATTAG

Translation (86 aa):
MGRKDSSNTKLPVDQYRKQIGKQDYKKTKPILRATKLKAEAKKTAIGIKEVGLMLAAILALLLAFYAFFY
LRLSTNIDSDLDLDED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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