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Report for CCDS23454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23454.1 Public Mus musculus 9 Cdv3 23 108 98 CCDS HistoryNCBI Gene:321022Re-query CCDS DB by CCDS ID:23454.1Re-query CCDS DB by GeneID:321022See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035484.10 ENSMUSP00000044420.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035484.10Link to Ensembl Protein Viewer:ENSMUSP00000044420.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035484Re-query CCDS DB by Protein ID:ENSMUSP00000044420
Original member NCBI NM_175833.2 NP_787027.1 Updated not alive Link to Nucleotide Sequence:NM_175833.2Link to Protein Sequence:NP_787027.1Re-query CCDS DB by Nucleotide ID:NM_175833Re-query CCDS DB by Protein ID:NP_787027
Current member NCBI NM_175833.3 NP_787027.1 Accepted alive Link to Nucleotide Sequence:NM_175833.3Link to Protein Sequence:NP_787027.1Re-query CCDS DB by Nucleotide ID:NM_175833Re-query CCDS DB by Protein ID:NP_787027Link to BLAST:NP_787027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787027.1 281 Q4VAA2-1 281 100% 0 0

Chromosomal Locations for CCDS 23454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103355163 103355313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103356280 103356439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103359876 103360018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103363975 103364051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103365054 103365368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGCCGAGACCGAGGAGCGGAGCCTGGACAACTTCTTCGCCAAGAGGGACAAGAAGAAGAAGAAGGAAC
GGAGCAGTCGCGCGGCCAACGCGGCGAGCGGCGCGGGCGGGAGCAGCGCGGCGGCGGGCTCCAGGCCGGG
CGATGGCGGGAGCCTGGGCTCCGGTGCCAGGTCGGGCGACGGCGGGAGCTTGGGCTCCGGCTCCAGGTCG
GGCGACGGCGGGAGCTCGGGCTCTGGTGCTAGGTCCGGAGACGGCGGGAGCTCGAGGTCCGGAGACGGCG
GGAGCGCGGGCCCCGCCGGCAAGGCCATAACGAAGGATGAAAATGAGTGGAAAGAATTTGAGCAAAGAGA
GGTTGATTACAGCGGATTAAGAGTTCAGGCAATGCAAATAAGTGAAAAGGAAGATGATGATAATGAGAAG
AGAGAAGATCCAGGAGATAATTGGGAAGAAGGTGGAGGTGGCAGTGGAGCAGAAAAATCTTCAGGTCCCT
GGAATAAAACCGCTCCGGTACAAGCGCCTCCTGCTCCAGTAACAGTTACAGAAACCCCGGAGCCAGCAAT
GCCCAGTGGTGTATACAGGCCTCCTGGGGCAAGGCTAACCACAACAAGGAAAACGCCACAAGGACCACCA
GAAATATACAGTGACACGCAGTTCCCATCCCTGCAGTCCACTGCCAAGCATGTAGAGAGCCGGAAGGATA
AAGAAATGGAGAAGAGCTTTGAAGTAGTAAGACACAAAAATAGAGATAGGGAGGAGGTTTCAAAAAACCA
GGCCCTTAAACTTCAGCTAGACAACCAGTATGCTGTGCTTGAGAATCAGAAGTACAGCCACACACAGTAC
AGCTAA

Translation (281 aa):
MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGSRPGDGGSLGSGARSGDGGSLGSGSRS
GDGGSSGSGARSGDGGSSRSGDGGSAGPAGKAITKDENEWKEFEQREVDYSGLRVQAMQISEKEDDDNEK
REDPGDNWEEGGGGSGAEKSSGPWNKTAPVQAPPAPVTVTETPEPAMPSGVYRPPGARLTTTRKTPQGPP
EIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKNRDREEVSKNQALKLQLDNQYAVLENQKYSHTQY
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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