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Report for CCDS16384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16384.1 Public Mus musculus 2 Or4a72 23 108 98 CCDS HistoryNCBI Gene:258784Re-query CCDS DB by CCDS ID:16384.1Re-query CCDS DB by GeneID:258784See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214870.1 ENSMUSP00000149075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214870.1Link to Ensembl Protein Viewer:ENSMUSP00000149075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214870Re-query CCDS DB by Protein ID:ENSMUSP00000149075
Original member Current member EBI ENSMUST00000217402.1 ENSMUSP00000150791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217402.1Link to Ensembl Protein Viewer:ENSMUSP00000150791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217402Re-query CCDS DB by Protein ID:ENSMUSP00000150791
Original member Current member NCBI NM_146788.2 NP_666999.2 Accepted alive Link to Nucleotide Sequence:NM_146788.2Link to Protein Sequence:NP_666999.2Re-query CCDS DB by Nucleotide ID:NM_146788Re-query CCDS DB by Protein ID:NP_666999Link to BLAST:NP_666999.2

Chromosomal Locations for CCDS 16384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 89574801 89575724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGGAGAGAAAAGTAATATCACAGAATTTATTCTCCTGGGTCTCACTCAGGATCCTGCTGGGAGAAAAA
TATTGTTTTTCATCTTTTTACTCATCTACATTGTAACCATGGTGGGCAACCTGCTTATTGTGGTGACAGT
CATTACCAGCCCCTCCTTGGGTTCTCCAATGTACTTCTTCCTTGCCTCTCTATCACTCTTGGATGCTCTT
TTCTCCACTGCCATCTCACCCAAGTTGATTGTGGATTTATTCTGTGATCAAAAAACCATCTCTTTTACAG
CTTGCATGAGCCAGCTCTTTATAGAGCATTTATTTGGTGGTGTTGATATTGTTATTCTGGTGGCAATGGC
TTATGATCGCTATGTGGCAATCTGTAAGCCACTGCACTATTTGGCCATCATGAATCGAAGGGTTTGCATC
ACTTTGTTGATAATTGCCTGGACTGGTGGTTTTACACACTCTCTGATTCAAATTGTCTTTGTATACAACC
TTCCTTTTTGTGGTCCTAATGTTATTGATCATTTTATTTGTGACATGTCTCCATTATTGGTACTTGCATG
CACAGACACCTACTTCATTGGCCTCACTGTTATTGCTAATGGTGGAGCCATGTGTATTGTGATCTTCACC
CTCCTCCTAGGCTCCTATGGAATCATCCTAAGATCTCTTAAGACTCATAGTCAGGAAGGGAGGCGCAAAG
CCCTCTCCACATGCAGCTCCCACATCTTGGTAGTTATCCTCTTCTTTGTTCCATGTATTTTTATGTATGC
CCGACCAGTTTACAACTTTCCCATTGATAAATGTATTACTGTTTTTTATACAATTATCACTCCCATGTTG
AATCCTTTAATATATACCTTAAGAAATTCAGAGATGAAAACTTGTATGAAAAAGCTCTGGTGCAAAATTC
TATCTGCAGATTAA

Translation (307 aa):
MGEKSNITEFILLGLTQDPAGRKILFFIFLLIYIVTMVGNLLIVVTVITSPSLGSPMYFFLASLSLLDAL
FSTAISPKLIVDLFCDQKTISFTACMSQLFIEHLFGGVDIVILVAMAYDRYVAICKPLHYLAIMNRRVCI
TLLIIAWTGGFTHSLIQIVFVYNLPFCGPNVIDHFICDMSPLLVLACTDTYFIGLTVIANGGAMCIVIFT
LLLGSYGIILRSLKTHSQEGRRKALSTCSSHILVVILFFVPCIFMYARPVYNFPIDKCITVFYTIITPML
NPLIYTLRNSEMKTCMKKLWCKILSAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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