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Report for CCDS30443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30443.1 Public Mus musculus X Vsig1 23 108 98 CCDS HistoryNCBI Gene:78789Re-query CCDS DB by CCDS ID:30443.1Re-query CCDS DB by GeneID:78789See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30443.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033806.4 ENSMUSP00000033806.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033806.4Link to Ensembl Protein Viewer:ENSMUSP00000033806.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033806Re-query CCDS DB by Protein ID:ENSMUSP00000033806
Original member Current member NCBI NM_030181.3 NP_084457.2 Accepted alive Link to Nucleotide Sequence:NM_030181.3Link to Protein Sequence:NP_084457.2Re-query CCDS DB by Nucleotide ID:NM_030181Re-query CCDS DB by Protein ID:NP_084457Link to BLAST:NP_084457.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084457.2 407 Q9D2J4-1 407 99.5086% 0 2

Chromosomal Locations for CCDS 30443.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140907675 140907726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140916185 140916351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140926323 140926521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140932465 140932620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140933007 140933126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140936267 140936405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140937666 140938056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGATGGTGTTTGCATTTTGGAAGGTCTTTCTGATCTTAAACTGCCTTGCAGGTCAGGTCAGTATGGTGC
AAGTGACCATCCCAGACACTTTCGTGAATGTGACTGTTGGATCTAATGTTACTCTTCTCTGCCTCTATAC
CACCACCGAGAAGTCCCTGGAAAAGCTTTCAATTCAATGGTCTTTCTTCCACAATAAGGAAATGGAGGAG
CCAATATCTATCTACTACTCTGAAGGTGGACAGGCTTCAGCTATTGGGCAATTCAAAGACCGAATAATTG
GGGCTACTAATCCCGGTAATGCATCTATCACCATATTGCATATGCAGCCAGCAGACAGTGGAATTTACAT
CTGTGATGTCAACAATCCTCCAGATTTTGTGGGCAAAAACCAAGGCCTCCTTGACGTCACTGTCTTAGTC
AAACCTTCCAAGCCCTTTTGTACCATCCAAGGAAGACCAGAAGCAGGCCATCCTATTTCCTTGTCTTGCC
TTTCTGCCTTTGGAACACCGTCTCCTTTGTATTACTGGTATAAGATTGAGGGGAACACCATTGTGCCAGT
AAAAGAAAGTTTCAACACGGCCACTGGAGTTTTAGTTATTGGAAATCTAACAAATTTTGAACAAGGTTAT
TACCAGTGTACTGCCATCAACAGTCTTGGCAATAGTTCCTGTGAAATTGACTTAACGTCTTCACATCCAG
AAGTTGGGATCATCATCGGAGCTTTGGTCGGTGCCCTGATAGGAGCTGCTGTTATCATCTGTGTGGTGTA
CTTTGCCAGGAACAAAGTTAAATCCAAGCAGCAGAAGAATTTAAATTCCAGCACAGAACTTGAGCCAATG
ACAAAGGTACACCATCCCCAACAAAGTGAGGCAATTTCAGCTGATGGCGTCCAGCTAGAAGGAACTCTGC
CATCTTCCATCCATGCTGGCCACAACACCGAACCTACTACTACAGCAGTCTTGGAGCCAGAATATGAGCC
TAATCCTCCACTGGAAACTACCACACAGCCTGACCCTGAACCAGAGGGTTCAGTGCCAGTGCTAGCACCT
GAGGCAGAGATTCAACCACACCCAGAGCTGGACCCGGAGACTGAGACAGAGCCTGAGCCTGAGCCTGAGC
CTAAGCCTGAGCCTGAGCCGGAACCTGAGCTTGAGCCTGATCCCCAGTCTGGAGTAATAATTGAGCCTCT
GAGCAAGGCGGGAGAGGATACAGTTAAGGCATAA

Translation (407 aa):
MMVFAFWKVFLILNCLAGQVSMVQVTIPDTFVNVTVGSNVTLLCLYTTTEKSLEKLSIQWSFFHNKEMEE
PISIYYSEGGQASAIGQFKDRIIGATNPGNASITILHMQPADSGIYICDVNNPPDFVGKNQGLLDVTVLV
KPSKPFCTIQGRPEAGHPISLSCLSAFGTPSPLYYWYKIEGNTIVPVKESFNTATGVLVIGNLTNFEQGY
YQCTAINSLGNSSCEIDLTSSHPEVGIIIGALVGALIGAAVIICVVYFARNKVKSKQQKNLNSSTELEPM
TKVHHPQQSEAISADGVQLEGTLPSSIHAGHNTEPTTTAVLEPEYEPNPPLETTTQPDPEPEGSVPVLAP
EAEIQPHPELDPETETEPEPEPEPKPEPEPEPELEPDPQSGVIIEPLSKAGEDTVKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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