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Report for CCDS39002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39002.1 Public Mus musculus 5 Krit1 23 108 98 CCDS HistoryNCBI Gene:79264Re-query CCDS DB by CCDS ID:39002.1Re-query CCDS DB by GeneID:79264See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080085.8 ENSMUSP00000078985.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080085.8Link to Ensembl Protein Viewer:ENSMUSP00000078985.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000080085Re-query CCDS DB by Protein ID:ENSMUSP00000078985
Original member Current member NCBI NM_030675.3 NP_109600.2 Accepted alive Link to Nucleotide Sequence:NM_030675.3Link to Protein Sequence:NP_109600.2Re-query CCDS DB by Nucleotide ID:NM_030675Re-query CCDS DB by Protein ID:NP_109600Link to BLAST:NP_109600.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109600.2 736 Q6S5J6-1 736 100% 0 0

Chromosomal Locations for CCDS 39002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3806467 3806568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3807299 3807458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3809636 3809728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3811256 3811385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3812332 3812575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3812742 3812857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3813051 3813194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3818527 3818683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3819310 3819417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3822087 3822243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3823634 3823785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3830606 3830772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3831496 3831583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3832020 3832226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3836778 3836894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3840874 3840942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGGAAATCCAGAAAACATCGAAGATGCTTACGTTGCAGTTATTCGTCCAAAGAACACTGCTAGTCTCA
ACTCCCGGGAGTATAGAGCTAAGTCCTATGAAATTTTATTGCATGAAGTTCCCATTGAAGGACAGAAAAA
AAAGCGAAAGAAAGTTTTGCTGGAAACTAAACTTCAAAGCAACAGTGAAATAGCACAAGGCATATTGGAC
TATGTAGTAGAAACTACCAAACCAATTTCTCCTGCAAACCAGGGGATTAAAGGGAAACGAGTGGTGCTGA
TGAGGAAGTTTCCTCTGGACGGAGAGAAGACAGGCAGAGAAGCAGCACTGTTTATCGTGCCATCAGTTGT
CAAAGATAATACTAAATATGCATATACTCCTGGATGCCCAATTTTTTACTGCTTACAAGATATTATGAGA
GTTTGTAGTGAATCCAGTACTCACTTTGCAACACTTACAGCAAGGATGTTAATAGCCTTGGATAAGTGGT
TAGATGAACGTCATGCGCAGTCTCACTTTATTCCAGCTTTATTCCGACCTTCTCCCCTTGAACGGATAAA
GACAAATGTCATAAACCCTGCGTATGCTGCTGAATTAGGCCAGGTAGACAATTCACTACATATGGGCTAT
AGTGCACTAGAAATAAAGAGTAAAATGCTAGCCCTAGAGAAAGCAGACACCTGCATTTACAACCCTTTGT
TTGGATCAGATCTTCAGTATACAAATCGGGTAGATAAAGTGGTAATAAATCCATACTTTGGTCTCGGAGC
TCCAGACTACTCAAAAATCCAAATTCCCAAACAGGAAAAATGGCAGCGAAGCATGAGCAGCGTTGTGGAA
GACAAAGAACGACAGTGGGTTGATGACTTTCCTTTACATCGAAATGCCTGTGAAGGAGATTCAGAATTAC
TGAGCCATCTTCTCGATAAAGGACTTTCAGTCAACCAACTAGATAATGACCACTGGGCACCCATTCATTA
TGCATGCTGGTATGGAAAAGTTGAGGCCACTCGCATATTATTAGAGAAAGGAAAGTGCAATCCAAACCTT
TTAAATGGGCAGCTCAGCTCACCGCTTCACTTTGCTGCTGGAGGCGGCCATGCTGAAATAGTGCAGATCC
TCCTGACTCACCCAGACATTGACAGGCACATAACAGATCAACAAGGAAGATCCCCATTAAATGTTTGTGA
AGAAAACAAACAAAATAACTGGGAAGAAGCTGCAAAATTGTTGAAAGACGCCATTAACAAGCCATATGAA
AAAGTTCGAATCTATAGAATGGATGGATCATACCGTTCTGTTGAACTAAAGCATGGCAATAATACCACAG
CACAGCAGATAATGGAGGGAATGCGGCTCTCTCAGGAAACTCAGCGATATTTCACTATTTGGATCTGTTC
AGAAAATCTTAGTCTTCAGTTCAAGCCTTATCATAAACCCTTGCAACAAGTTCATGACTGGCCAGAAATA
CTTGCTGAATTGACTAATTTGGATCCACAAAGAGAAACACCACAGCTTTTCCTAAGAAGAGATGTGGGAC
TTCCTTTAGAAGTTGAGAAAAAGATTGAAGACCCACTAGCTATTCTTATTCTCTTTGATGAAGCCAGATA
TAATTTACTGAAGGGCTTTTATACAGCTCCTGATGCTAAACTGATAACACTGGCAAGTCTACTGTTACAA
ATAGTTTATGGGAATTATGAGAGTAAAAAGCACAAACAAGGTTTCTTAAATGAAGAAACTCTGAAATCCA
TCGTACCTATTACTAAACTGAAAAGTAAGGCGCCTCACTGGATAAACCGAATACTCCATGAGTACAAGAA
TCTGAGTCTGAGTGAGGGCGTCAGTAAGGAAATGCACCACCTGCAGCGCATGTTCCTACAGAACTGCTGG
GAGATCCCTACGTACGGAGCCGCCTTCTTCACAGGACAGATATTTACAAAGGCAAGCCCAAGCAATCATA
AAGTCATCCCTGTGTATGTAGGAGTGAATATAAAAGGACTTCATCTCCTGAACATGGAAACTAAGGCATT
ACTCATCAGTCTCAAGTACTGTTGCTTTACGTGGCAGCTGGGAGATGCTGGTACTTGTTTTCAAATCCAT
AGTATGGAAAATAAAATGAGCTTTATAGTACACACAAAACAGGCTGGCCTTGTGGTAAAGCTGCTAATGA
AGTTAAATGGACAACTAATGCCCTCTGAAAGAAATTCATGA

Translation (736 aa):
MGNPENIEDAYVAVIRPKNTASLNSREYRAKSYEILLHEVPIEGQKKKRKKVLLETKLQSNSEIAQGILD
YVVETTKPISPANQGIKGKRVVLMRKFPLDGEKTGREAALFIVPSVVKDNTKYAYTPGCPIFYCLQDIMR
VCSESSTHFATLTARMLIALDKWLDERHAQSHFIPALFRPSPLERIKTNVINPAYAAELGQVDNSLHMGY
SALEIKSKMLALEKADTCIYNPLFGSDLQYTNRVDKVVINPYFGLGAPDYSKIQIPKQEKWQRSMSSVVE
DKERQWVDDFPLHRNACEGDSELLSHLLDKGLSVNQLDNDHWAPIHYACWYGKVEATRILLEKGKCNPNL
LNGQLSSPLHFAAGGGHAEIVQILLTHPDIDRHITDQQGRSPLNVCEENKQNNWEEAAKLLKDAINKPYE
KVRIYRMDGSYRSVELKHGNNTTAQQIMEGMRLSQETQRYFTIWICSENLSLQFKPYHKPLQQVHDWPEI
LAELTNLDPQRETPQLFLRRDVGLPLEVEKKIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQ
IVYGNYESKKHKQGFLNEETLKSIVPITKLKSKAPHWINRILHEYKNLSLSEGVSKEMHHLQRMFLQNCW
EIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYCCFTWQLGDAGTCFQIH
SMENKMSFIVHTKQAGLVVKLLMKLNGQLMPSERNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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