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Report for CCDS20332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20332.1 Public Mus musculus 6 Rpn1 23 108 98 CCDS HistoryNCBI Gene:103963Re-query CCDS DB by CCDS ID:20332.1Re-query CCDS DB by GeneID:103963See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20332.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032143.7 ENSMUSP00000032143.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032143.7Link to Ensembl Protein Viewer:ENSMUSP00000032143.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032143Re-query CCDS DB by Protein ID:ENSMUSP00000032143
Original member Current member NCBI NM_133933.4 NP_598694.3 Accepted alive Link to Nucleotide Sequence:NM_133933.4Link to Protein Sequence:NP_598694.3Re-query CCDS DB by Nucleotide ID:NM_133933Re-query CCDS DB by Protein ID:NP_598694Link to BLAST:NP_598694.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598694.3 608 Q91YQ5 608 100% 0 0

Chromosomal Locations for CCDS 20332.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88084531 88084794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88088350 88088414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88089989 88090295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88093786 88093995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88095523 88095715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88099274 88099373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88100629 88100767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88100862 88100981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88101975 88102220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88103365 88103547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1827 nt):
ATGGAGTCGCCGGTCGCCTTGCTGTTGCTGCTGCTGCTATGTCTCGGGGCCTTGGCCCCGACGCCCGGCA
GCGCCTCCTCGGAGGCTCCGCCGCTGGTCAACGAGGACGTGAAGCGCACGGTGGACCTGAGCAGCCACCT
AGCCAAGGTGACGGCTGAGGTGGTCCTGGTACACCCGGGCGGCGGCTCCACATCACGAGCCAGCTCTTTC
GTTCTGGCCCTGGAGCCAGAACTGGAGTCGCGGCTTGCGCACCTAGGCGTGCAGATAAAGGGAGAAGATG
AGGAAGACAACAACCTAGAAGTACGAGAAACCAAAATTAAAGGGAAAAGTGGGAGATTTTTCACGGTCAA
GCTCCCAGTTGCTCTTGATCCTGGGTCCAAGATCTCGGTCGTTGTGGAAACTGTCTACACCCATGTGCTT
CATCCGTATCCGACTCAGATAACTCAGTCAGAGAAACAGTTCGTCGTGTTTGAGGGCAACCATTATTTCT
ACTCTCCCTATCCAACAAAGACCCAGACCATGCGAGTGAAACTGGCGTCCCGAAATGTGGAAAGCTATAC
CAAGCTGGGGAACCCCTCGAGATCTGAGGACGTCCTTGATTATGGGCCTTTTAAAGACATCCCTGCCTAC
AGTCAGGACACTTTCAAAGTACATTACGAGAACAATAGCCCTTTCCTGACCATCACCAGTATGACCCGGG
TCATCGAGGTATCTCACTGGGGCAATATTGCTGTGGAAGAGAACGTGGACTTGAAGCACACGGGCGCAGT
GCTGAAGGGGCCTTTCTCCCGCTACGATTACCAGAGGCAGCCTGACAGTGGGATCTCCTCCATTCGTTCT
TTTAAGACCATCCTTCCTGCTGCCGCCCAGGATGTCTATTACCGGGATGAGATTGGTAATGTTTCCACCA
GCCACCTCCTTATCTTGGATGACTCTGTGGAAATGGAAATCCGGCCTCGATTTCCTCTCTTTGGAGGGTG
GAAGACACACTACATCGTTGGTTACAACCTCCCAAGCTATGAATACCTCTATAATCTGGGTGACCAGTAT
GCACTGAAGATGCGGTTTGTAGACCACGTGTTTGATGAGCAAGTGATAGATTCTCTGACAGTGAAGATCA
TCTTGCCCGAGGGAGCCAAGAACATCCAGGTGGACAGTCCCTACGATATCAGCCGGGCCCCAGACGAGCT
GCATTATACCTACCTAGACACGTTCGGCCGCCCGGTGATTGTGGCTTACAAGAAGAATCTCGTCGAGCAA
CACATTCAGGACATTGTGGTGCACTACACGTTCAACAAGGTTCTCATGCTGCAGGAGCCGCTGCTGGTCG
TGGCCGCCTTCTACATCCTGTTCTTCACCGTCATCATCTACGTCCGTCTGGACTTTTCCATCACCAAGGA
TCCAGCTGCAGAAGCCAGGATGAAAGTGGCCTGTATCACAGAGCAGGTCTTAACCCTGGTCAACAAGAGG
CTGGGCCTCTACCGTCACTTTGATGAGACTGTCAATAGATACAAGCAGTCCCGGGATATCTCTACCCTCA
ACAGTGGCAAGAAGAGCCTAGAGACAGAGCACAAGGCTGTGACCAGCGAGATTGCTGTACTGCAGTCTCG
GCTGAAGACGGAGGGCTCAGACCTGTGTGACAGGGTGAGTGAGATGCAGAAGCTGGACGCCCAGGTCAAG
GAGCTGGTCCTGAAGTCGGCGGTAGAAGCAGAGAGGCTGGTGGCTGGCAAGCTCAAGAAGGATACGTACC
TGGAAAACGAGAAGCTCAGCTCAGGAAAACGCCAGGAGCTGGTCACCAAGATCGACCACATCCTGGATGC
TCTGTAG

Translation (608 aa):
MESPVALLLLLLLCLGALAPTPGSASSEAPPLVNEDVKRTVDLSSHLAKVTAEVVLVHPGGGSTSRASSF
VLALEPELESRLAHLGVQIKGEDEEDNNLEVRETKIKGKSGRFFTVKLPVALDPGSKISVVVETVYTHVL
HPYPTQITQSEKQFVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPSRSEDVLDYGPFKDIPAY
SQDTFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIRS
FKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQY
ALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQ
HIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAAEARMKVACITEQVLTLVNKR
LGLYRHFDETVNRYKQSRDISTLNSGKKSLETEHKAVTSEIAVLQSRLKTEGSDLCDRVSEMQKLDAQVK
ELVLKSAVEAERLVAGKLKKDTYLENEKLSSGKRQELVTKIDHILDAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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