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Report for CCDS27266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27266.1 Public Mus musculus 14 Rcbtb2 23 108 98 CCDS HistoryNCBI Gene:105670Re-query CCDS DB by CCDS ID:27266.1Re-query CCDS DB by GeneID:105670See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022702.12 ENSMUSP00000022702.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022702.12Link to Ensembl Protein Viewer:ENSMUSP00000022702.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022702Re-query CCDS DB by Protein ID:ENSMUSP00000022702
Original member Current member EBI ENSMUST00000110952.9 ENSMUSP00000106577.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110952.9Link to Ensembl Protein Viewer:ENSMUSP00000106577.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110952Re-query CCDS DB by Protein ID:ENSMUSP00000106577
Original member Current member EBI ENSMUST00000169479.7 ENSMUSP00000126898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169479.7Link to Ensembl Protein Viewer:ENSMUSP00000126898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169479Re-query CCDS DB by Protein ID:ENSMUSP00000126898
Original member Current member EBI ENSMUST00000164822.7 ENSMUSP00000131588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164822.7Link to Ensembl Protein Viewer:ENSMUSP00000131588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164822Re-query CCDS DB by Protein ID:ENSMUSP00000131588
Original member Current member NCBI NM_001170694.1 NP_001164165.1 Accepted alive Link to Nucleotide Sequence:NM_001170694.1Link to Protein Sequence:NP_001164165.1Re-query CCDS DB by Nucleotide ID:NM_001170694Re-query CCDS DB by Protein ID:NP_001164165Link to BLAST:NP_001164165.1
Original member Current member NCBI NM_134083.4 NP_598844.3 Accepted alive Link to Nucleotide Sequence:NM_134083.4Link to Protein Sequence:NP_598844.3Re-query CCDS DB by Nucleotide ID:NM_134083Re-query CCDS DB by Protein ID:NP_598844Link to BLAST:NP_598844.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164165.1 551 Q99LJ7-1 551 100% 0 0
NP_598844.3 551 Q99LJ7-1 551 100% 0 0

Chromosomal Locations for CCDS 27266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73154853 73154894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73161940 73162095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73162327 73162477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73164684 73164850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73166480 73166638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73166765 73166872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73167990 73168132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73173723 73173913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73174390 73174516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73176995 73177134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73178433 73178563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73182459 73182599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGAAGAAGAAGTGCCTGGTTTCTATGGAGAAAGTGGCAAGTCAGTACAGGCTACCCTGTCATCGTTGA
AGATGTTAGATGTGGGAAAGTGGCCAATTTTTTCCCTTTGTTCTGAGGAAGAGTTACAGTTGATTCGTCA
GGCTTGTGTCTTCGGCAGTGCTGGCAATGAAGTTTTATACACTACAGTCAACGATGAGATTTTTGTGCTT
GGCACAAACTGCAGTGGCTGTCTGGGGGTAGGCGACATTCAGAGCACTATTGAGCCTCGGAGACTGGATT
CTCTAACTGGCAAAAAAATAGCCAGCCTCAGCTATGGGAGTGGCCCTCATATCGTCCTTGCGACAACAGA
TGGAGAAGTCTTTACCTGGGGTCACAATGCTTATAGCCAGCTGGGCAATGGGACAACGAATCATGGTTTA
GTGCCCTGCCATATCTCTACGAATTTGTCAAACAAACAAGTCATTGAGGTCGCCTGTGGGTCTTACCACT
CTTTGGTTCTAACATCTGATGGGGAGGTGTTTGCCTGGGGTTATAATAACTCAGGGCAAGTAGGATCTGG
ATCAACAGCTAACCAGCCCATTCCCCGAAGAGTCACTGGATGCTTGCAGAATAAAGTAGTTATGAACATA
GCATGTGGGCAGATGTGCTCCATGGCTGTTGTGGACACTGGAGAGGTCTACGTCTGGGGTTACAATGGCA
ATGGGCAGCTGGGCCTGGGCAGCAGTGGCAACCAGCCCACCCCATGCAGAGTGGCCGCCCTGCAAGGCAT
CCGTGTCCAGCGGGTTGCCTGTGGCTACGCACACACATTAGTATTAACAGATGAAGGTCAAATATATGCT
TGGGGTGCAAATTCTTATGGCCAGTTGGGCACTGGCAATAAAAGTAACCAGTCCTATCCTACCCCTGTTG
TTGTGGAAAAGGACAGAATCATAGAGATTGCAGCCTGTCACTCTGCCCACACATCTGCTGCCAAGACACA
AGGTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCGGTGATCCTTCCACACCACACTCACTTC
TGCTGCACCGATGACGTGTTTGCCTGCTTCGCCACCCCGGCTGTCACCTGGCGCCTTCTCTCCGTGGAAC
CTGACGACCACCTCACTGTGGCCGAGTCTCTGAAGAGGGAGTTTGACAACCCTGACACTGCAGACCTCAA
GTTTCTGGTTGATGGAAAATACATTTATGCTCACAAAGTCCTTCTCAAAATTAGGTGTGAACATTTTCGT
TCTTCATTAGAAGACAGTGAAGACGATATTGTAGAAATGAGCGAGTTTTCGTATCCTGTGTTCCGAGCTT
TCCTGGAGTATCTATACACAGATAACATCAGCCTATCTCCTGAGGAGGCAGTAGGGTTGCTAGATCTGGC
TACATTTTACAGTGAGACTCGGTTGAAAAAGCTCTGTCAACAAACTATCAAGCAAGGAATCTGTGAGGAG
AATGCTATTGCTCTGCTCTCTGCTGCTGTCAAGTATGATGCCCAGGACTTAGAAGAGTTCTGCTTCAGGT
TCTGCATCAACCATCTGACTGTAGTAACACAAACGTCAGGCTTTGCAGAAATGGACCACGATCTTCTAAA
GAACTTTATCAGCAAAGCCAGCAGAGTTGGAGCCTTTAAGAACTGA

Translation (551 aa):
MEEEVPGFYGESGKSVQATLSSLKMLDVGKWPIFSLCSEEELQLIRQACVFGSAGNEVLYTTVNDEIFVL
GTNCSGCLGVGDIQSTIEPRRLDSLTGKKIASLSYGSGPHIVLATTDGEVFTWGHNAYSQLGNGTTNHGL
VPCHISTNLSNKQVIEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTANQPIPRRVTGCLQNKVVMNI
ACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQIYA
WGANSYGQLGTGNKSNQSYPTPVVVEKDRIIEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHHTHF
CCTDDVFACFATPAVTWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVLLKIRCEHFR
SSLEDSEDDIVEMSEFSYPVFRAFLEYLYTDNISLSPEEAVGLLDLATFYSETRLKKLCQQTIKQGICEE
NAIALLSAAVKYDAQDLEEFCFRFCINHLTVVTQTSGFAEMDHDLLKNFISKASRVGAFKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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