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Report for CCDS20538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20538.1 Public Mus musculus 6 Mlf2 23 108 98 CCDS HistoryNCBI Gene:30853Re-query CCDS DB by CCDS ID:20538.1Re-query CCDS DB by GeneID:30853See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032214.13 ENSMUSP00000032214.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032214.13Link to Ensembl Protein Viewer:ENSMUSP00000032214.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032214Re-query CCDS DB by Protein ID:ENSMUSP00000032214
Original member Current member EBI ENSMUST00000180095.3 ENSMUSP00000135920.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180095.3Link to Ensembl Protein Viewer:ENSMUSP00000135920.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180095Re-query CCDS DB by Protein ID:ENSMUSP00000135920
Original member Current member NCBI NM_001170341.1 NP_001163812.1 Accepted alive Link to Nucleotide Sequence:NM_001170341.1Link to Protein Sequence:NP_001163812.1Re-query CCDS DB by Nucleotide ID:NM_001170341Re-query CCDS DB by Protein ID:NP_001163812Link to BLAST:NP_001163812.1
Original member Current member NCBI NM_145385.2 NP_663360.1 Accepted alive Link to Nucleotide Sequence:NM_145385.2Link to Protein Sequence:NP_663360.1Re-query CCDS DB by Nucleotide ID:NM_145385Re-query CCDS DB by Protein ID:NP_663360Link to BLAST:NP_663360.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163812.1 247 Q99KX1 247 100% 0 0
NP_663360.1 247 Q99KX1 247 100% 0 0

Chromosomal Locations for CCDS 20538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124932127 124932176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124932411 124932537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124932777 124932812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124933954 124934007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124934291 124934419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124934586 124934745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124935233 124935420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGTTCCGCTTCATGAGGGACGTGGAGCCTGAGGATCCCATGTTCCTGATGGACCCCTTCGCAATTCACC
GTCAGCACATGAGCCGCATGTTGTCAGGCGGCTTTGGATATAGCCCCTTCCTGAGCATCACAGATGGTAA
CATGCCAGCAACCAGGCCTGCCAGCCGCAGGATGCAGGCTGGGGCTGTCTCTCCCTTCGGGATGTTGGGA
ATGTCCGGCGGTTTCATGGACATGTTTGGGATGATGAACGACATGATCGGGAACATGGAGCACATGGCTG
CAGGGGGCAACTGCCAGACCTTCTCCTCCTCCACTGTTATCTCCTACTCCAACACTGGGGACGGCGCGCC
CAAGGTTTACCAGGAGACGTCGGAGATGCGCTCTGCCCCAGGCGGGATCCGGGAGACACGGAGGACTGTC
CGGGACTCAGACAGTGGTCTAGAGCAGATGTCCATTGGGCATCACATTCGGGATAGGGCTCACATCCTCC
AGCGCTCCCGAAACCACCGCACAGGGGACCAGGAAGAGCGGCAGGACTACATCAACCTGGATGAAAGTGA
GGCAGCAGCATTTGATGATGAATGGAGAAGGGAGACATCCCGATACAGACAGCAGCGTCCTCTGGAATTT
CGACGGCATGAGGCATCTGTGGGTGGGGGGCGAAGGGCTGAGGGGCCTCCCCGCCTGGCGATCCAGGGAC
CTGAGGACTCCCCCTCCCGACAGTCCCGTCGTTATGACTGGTGA

Translation (247 aa):
MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPATRPASRRMQAGAVSPFGMLG
MSGGFMDMFGMMNDMIGNMEHMAAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTV
RDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRYRQQRPLEF
RRHEASVGGGRRAEGPPRLAIQGPEDSPSRQSRRYDW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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