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Report for CCDS24872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24872.1 Public Mus musculus 11 Odf4 23 108 98 CCDS HistoryNCBI Gene:252868Re-query CCDS DB by CCDS ID:24872.1Re-query CCDS DB by GeneID:252868See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038932.13 ENSMUSP00000040050.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038932.13Link to Ensembl Protein Viewer:ENSMUSP00000040050.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038932Re-query CCDS DB by Protein ID:ENSMUSP00000040050
Original member Current member NCBI NM_145746.2 NP_665689.1 Accepted alive Link to Nucleotide Sequence:NM_145746.2Link to Protein Sequence:NP_665689.1Re-query CCDS DB by Nucleotide ID:NM_145746Re-query CCDS DB by Protein ID:NP_665689Link to BLAST:NP_665689.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665689.1 290 Q8VI88-1 290 100% 0 0

Chromosomal Locations for CCDS 24872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 68921958 68922175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68922420 68922554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68922841 68923014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68926518 68926816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 68926921 68926967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGAACCTGACTTGAATGAGGAAGAATCCGAGAGGATAAGGACCAGCAGGAACAGGCGGTCACTGGAGC
ATCGTCGCAACTCCCTATTGCCCTTTCAATGGAAAGCAACAAACAACTCTCGCTGGATGGCCCAGGTGGT
GGCCTCAGAGTTCAGCCTGGTGGCCTTCCTCCTGCTCCTAGTCATGGTCTTCTCCAAGAAATGGTTGTAT
CCCTCTAAGAGTCGTTTCCATCAGCGCTACCCCCAAAATGTCACCAAGAGAGTCTACACCTCCATCCACA
GTATGTCCACAGGGCTCCTGTACATCTGCGTATCTAAAAGCTGCCCCAGCTCAGACAACGGAGAAGACAA
TTTTAAGATGTGGACAATCCATCCAGTTTTTGGGGTGGCTAAGATAAGTTTCACCCTGGCCATAGGGCTG
GGTTTTGTCCTCACCACCTGGCTGCACCTGCCCTACCTGCCCTGCTTGCAGAGAATGCCTTTCTTTGGCC
TGATTGGAATCATCCTGAGCTTCTGTGAAGTCACCTTAATTTTCCTCACCCTCCTGTTGTTCCCTGTTAA
CCTCTGGATCTACGAGCTGAGGAAGAATATATCGGTTCCCATCGGCTGGAGCTATTTCATTGGTTGGCTG
GTGCTCATCCTGTATTTCACTTGTGGGATTCTTTGCTACCTCAACCATAAAAACTACTGGAGTCTGATAA
TGAGCAGCACCACCATCAACACTGCTTGCAGCAGCTTAGGGCCAGAGTCTCTGGTGAGTCCCTCCCAGAC
CCCCAGCAGCCAGGAGAACAGCCAGGAGTCTCCTAAGGATGACCAAAAGCCATCAAGTCCAGATAAAGTA
GTCTCACCACCCCAGCCAGACACCACTGGCTAG

Translation (290 aa):
MEPDLNEEESERIRTSRNRRSLEHRRNSLLPFQWKATNNSRWMAQVVASEFSLVAFLLLLVMVFSKKWLY
PSKSRFHQRYPQNVTKRVYTSIHSMSTGLLYICVSKSCPSSDNGEDNFKMWTIHPVFGVAKISFTLAIGL
GFVLTTWLHLPYLPCLQRMPFFGLIGIILSFCEVTLIFLTLLLFPVNLWIYELRKNISVPIGWSYFIGWL
VLILYFTCGILCYLNHKNYWSLIMSSTTINTACSSLGPESLVSPSQTPSSQENSQESPKDDQKPSSPDKV
VSPPQPDTTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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