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Report for CCDS24717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24717.1 Public Mus musculus 11 Fam114a2 23 108 98 CCDS HistoryNCBI Gene:67726Re-query CCDS DB by CCDS ID:24717.1Re-query CCDS DB by GeneID:67726See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020831.12 ENSMUSP00000020831.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020831.12Link to Ensembl Protein Viewer:ENSMUSP00000020831.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020831Re-query CCDS DB by Protein ID:ENSMUSP00000020831
Original member Current member NCBI NM_001168667.1 NP_001162138.1 Accepted alive Link to Nucleotide Sequence:NM_001168667.1Link to Protein Sequence:NP_001162138.1Re-query CCDS DB by Nucleotide ID:NM_001168667Re-query CCDS DB by Protein ID:NP_001162138Link to BLAST:NP_001162138.1
Original member Current member NCBI NM_026342.3 NP_080618.1 Accepted alive Link to Nucleotide Sequence:NM_026342.3Link to Protein Sequence:NP_080618.1Re-query CCDS DB by Nucleotide ID:NM_026342Re-query CCDS DB by Protein ID:NP_080618Link to BLAST:NP_080618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162138.1 490 Q8VE88-2 490 100% 0 0
NP_080618.1 490 Q8VE88-2 490 100% 0 0

Chromosomal Locations for CCDS 24717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57484018 57484140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57487567 57487620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57490110 57490182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57491920 57492059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57493004 57493126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57499726 57499805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57505234 57505357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57506837 57506995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57507493 57507627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57509378 57509466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57513242 57513334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57513636 57513735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57514095 57514274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGTCAGATAAGGATCCTCCAGAGTCTCCAGTGGTAACCGGAGTAGCTTCGACCCTTAAAGATGAGAACT
GTGAGCCAGTGGAGAAGCCAGAGGATAAATCTCAGCCTGTAGTGTCCACCCGGAAAAGACCAGAGACCAA
ACCTTCCAGTGACCTTGAGGCTTCTGCTCTTCCTGCTCAGGAGACTGCTTCTAAAGATGTACCTCAGACT
GGGTGGGGTTATTGGGGCAGTTGGGGCAAGTCTCTGCTCTCCTCAGCCTCAGCTACGGTAGCTACAGTAG
GACAAGGTATTTCAAATGTCATTGAGAAGGCAGAGACTTCTCTTGGGATTCCTAGCCCCACTGAAATTTC
AGCTGAAGTCAAGCAAGCAGCAGGAGAAAAAAATGCTGGTGAGAATGGAAGCTTACTAGTGGCTGCACCA
TTCGGGATGCTCTCGACCATCTCTACAGCTGTGCAGAGCACGGGCAAGAGCGTTATCAGTGGGGGCTTGG
ATGCCTTGGAATTCATTGGGAAGAAGACAATGGATGTCATAGCAGAAGGGGACCCTGGATTTAAAAGAAC
CAAGGGCCTGATGAATCGGACTTCTACGCTGTCTCAGGTTTTACGAGAGGCAAAGGATAAAGAAGAGCAG
CGGCCTTCCAATGAAGTAACCATGGAAACAGACAAGAAAACTCATTATGGGCTACTCTTTGATGAGTTTC
AAGGCCTTTCACATCTAGAAGCTCTGGAGATGCTTTCCCGAGAAAGTGAGATAAAGGTGAAATCTATTCT
TAGTTCTCTGAGTGGAGAAGAACTACAGACAACTAGACTTGAGCTAGAGCAGCTCAAAGAAGTGTTTTCC
CTAGCAGAGTTCTGTGAGGAAGAGGAGGAGGAGAGACAAGGGGATGACAATTTTACCAAGGAGATAACAG
ATCTGTTTGCTCAGCTTCACGTCTCCTCCCGACCAGAGAAGCTTGCCAGGGCAAGAAATACAGCCTACAA
ATGGATCAGAACATCTCTGGCTAGGCCAGTAGCAGAGAAAGAAGAAGGAGAAAAAGAGTCGGAGGCAGGA
AATACCGAGGAAGCCCAGAAACATTCAATAGAGGATATCCATGCATTTGCAATCCGGAGCTTAGCAGAGT
TGACTGCCTGCTCAATAGAATTGTTCCACAAAACAGCAGCATTGGTTTTGCATGGCCAGAAGCAGGAGGT
GACAGCCTTAGAGAGGAGCCAGACTCTCTCCCAGATGACAGTCATGCTGTGTAAAGACCTGGCCTCGCTG
TCTAAAGAGTTCACCACCTGCCTGACCACAGCTGGGGTCAGAGAGAAGGCAGATGTTCTTAATCCAGTCA
TCACTGCAGTGTTTCTAGAGGCCTCAAACAGCGCCTCTTACATTCAAGATGCCTTCCAACTCCTCCTGCC
TGTGCTGCAGATCTCTCTCATCGAGAGCAAGACAGAGTCATCCACGTGTGAGCCACAGTCCAGAGACCTC
TGA

Translation (490 aa):
MSDKDPPESPVVTGVASTLKDENCEPVEKPEDKSQPVVSTRKRPETKPSSDLEASALPAQETASKDVPQT
GWGYWGSWGKSLLSSASATVATVGQGISNVIEKAETSLGIPSPTEISAEVKQAAGEKNAGENGSLLVAAP
FGMLSTISTAVQSTGKSVISGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMNRTSTLSQVLREAKDKEEQ
RPSNEVTMETDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILSSLSGEELQTTRLELEQLKEVFS
LAEFCEEEEEERQGDDNFTKEITDLFAQLHVSSRPEKLARARNTAYKWIRTSLARPVAEKEEGEKESEAG
NTEEAQKHSIEDIHAFAIRSLAELTACSIELFHKTAALVLHGQKQEVTALERSQTLSQMTVMLCKDLASL
SKEFTTCLTTAGVREKADVLNPVITAVFLEASNSASYIQDAFQLLLPVLQISLIESKTESSTCEPQSRDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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