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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS39054.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39054.1 |
Public |
Mus musculus |
5 |
Ift172 |
23 |
108 |
98 |
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Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 39054.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000041565.10 |
ENSMUSP00000049335.7 |
Accepted |
alive |
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NCBI |
NM_026298.5 |
NP_080574.5 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_080574.5 |
1749 |
Q6VH22-1 |
1749 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 39054.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5250 nt): ATGCAGTTGAAGCACCTGAGGACCCTGCTGAGCCCTCAGGATGGAGCTGCGAAGGTGACATGCATGGCCT GGTCCCAGAACAATGCTAAATTTGCTGTCTGCACAGTGGACCGAGTGGTACTTCTGTATGATGAACATGG GGAGCGGAGAGACAAGTTCTCCACCAAACCAGCTGACATGAAGTACGGCAGGAAAAGCTACATGGTGAAA GGCATGGCTTTCTCTCCCGATTCCACAAAAATTGCCATAGGACAGACTGACAACATCATCTATGTCTACA AGATTGGAGAAGATTGGGGAGACAAGAAGGTCATCTGCAACAAGTTCATCCAGACGAGTGCTGTGACTTG TCTGCAGTGGCCTGCGGAATACGTCATTGTCTTTGGACTGGCAGAAGGCAAGGTTCGCTTAGCAAACACT AAAACTAACAAGTCATCTACTATCTATGGGACAGAGTCTTACGTGGTAGCACTGACAACCAACTGCTCTG GGAAGGGGATCCTCTCGGGTCACGCAGACGGCACCATCGTCAGGTACTTCTTCGATGATGAAGGCTCTGG AGAGTCACAGGGAAAGTTGGTTAACCATCCATGCCCACCCTATGCCTTGGCCTGGGCCACCAACAGCATT GTGGCCGCTGGCTGTGACCGGAGGATTGTGGCCTATGGAAAGGAAGGCCATGTGCTGCAGACTTTTGACT ATAGCCGAGACCCTCAGGAGCGGGAGTTCACCACAGCTGCTGCAAGTCCTGGAGGCCAGTCTGTTGTGCT GGGAAGTTATGACAGACTTCGGGTGTTCAACTGGAGTCCTCGAAGAAGCATCTGGGAAGAGGCGAAACCC AAGGAGATCGCTAACTTATACACCGTCACCGCCCTGGCCTGGAAGCGGGATGGCTCACGACTCTGTGCGG GAACACTCTGTGGTGGGGTGGAACAGTTTGACTGCTGCCTCCGAAGGAGCATTTACAAGAACAAGTTCGA GCTGACGTATGTGGGCCCTAGCCAGGTGATTGTGAAGAACCTGTCTTCAGGGACCAGGGTGGTGCTCAAG TCACACTATGGCTATGAAGTAGAAGAGGTGAAAATCCTGGGAAAGGAACGTTACTTGGTGGCTCACACAT CAGACACACTGCTGCTGGGAGACCTGAACACGAACCGCCTCAGCGAGATAGCCTGGCAGGGATCTGGGGG CAATGAGAAATATTTCTTTGAAAATGAGAATGTGTGCATGATCTTCAATGCTGGAGAGCTGACCCTGGTG GAATATGGGAGTAACGACTCCTTGGGTTCTGTGCGCACCGAATTCATGAACCCTCACCTCATCAGCGTCC GTATCAATGAGCGCTGCCAGCGAGGAATGGAAGATAATAAGAAATTGGCTTATCTTGTTGATATTAAGAC AATTGCTATAGTGGATCTGATTGGTGGCTACAACATTGGTACTATCAGTCACGAAAGCCGGGTGGATTGG CTAGAACTTAACGAGACTGGACACAAGCTTCTCTTTAGAGACCGGAAACTTCGGCTGCATCTATATGATA TTGAAAGCTGCTCTAAGACAATGATCCTCAACTTCTGCTCCTACGTGCAGTGGGTTCCGGGGAGTGATGT GCTGGTAGCTCAGAACCGAAACAGCTTATGTGTATGGTACAATATTGAGGCCCCTGAGAGAGTCACCATG TCCTCTATCAGGGGTGATGTTGTCGGTCTGGAGCGAGGTGGTGGGAAGACAGAGGTCATGGTGACAGAAG GCGTGACTACTGTGGCCTACACCCTGGACGAGGGCCTGATTGAGTTTGGAACAGCCATCGATGATGGCAA CTACACCCGGGCTACAGCCTTCTTGGAGACCCTGGAGATGACTCCCGAAACAGAGGCAATGTGGAAAACC TTGAGCAAACTGGCCCTGGAGGCAAGGCAGCTTCACACTGCTGAGAGGTGCTTCTCTGCTTTAGGTCATG TGGCCAAAGCTCGGTTCCTGCATGAGACCAATGAGATTGCAGATCAGGTGTCCAGGGAATATGGTGGAGA AGGAACGGACTTCTATCAGGTCCGAGCTCGTCTCGCCATGCTGGAGAAGAACTACAAACTTGCTGAGATG ATCTTCTTGGAACAGAATGCTGTTGAGGAGGCCATGGACATGTACCAAGAGTTGCACCGCTGGGAGGAAT GCATTGCTGTGGCTGAGGCCAAGGGACACCCAGCCCTGGAGAAGCTGCGCAGAGACTACTATCAATGGTT AATGGACACACAGCAAGAGGAACGAGCAGGTGAACTGCAGGAGAGCCAAGGGGATGGGCTGGCAGCTATC AGCCTCTACCTCAAAGCTGGGCTCCCTGCCAAAGCTGCGCGGCTGGTGCTGACCCGAGAGGAGCTGCTGG CCAACACAGAACTAGTAGAACATATCACCACAGCCCTCATCAAGGGAGAGCTCTATGAAAGGGCAGGTGA TCTCTTTGAGAAGATTCGAAATCCACAGCGGGCCCTTGAGTGTTACTGTAAAGGCAATGCATTCATGAAA GCTGTTGAGCTGGCTCGACTGGCCTTCCCAGTGGAGGTGGTGAGGCTAGAGGAGGCCTGGGGGGACCACT TGGTACAGCAAAAGCAGCTGGATGCGGCCATCAACCACTATATTGAAGCCAGGTGCTCCATCAAAGCAAT TGAGGCTGCCCTGGGTGCCCGCCAGTGGAAGAAGGCAATTTATATATTAGATCTCCAGGATCGCAACACT GCATCTAAATACTATCCTCGTGTGGCTCAACACTATGCGTCTCTGCAGGAGTATGAGATTGCTGAGGAGC TCTACACCAAAGGAGACCGGACCAAAGACGCCATAGACATGTACACCCAGGCCGGCCGCTGGGAGCAAGC CCACAAGCTGGCCATGAAATGCATGCGACCCGAGGACGTGTCCGTGCTTTACATCACACAAGCCCAGGAG ATGGAGAAGCAGGGCAAGTACCGAGAGGCTGAGAGGCTGTACGTGACGGTGGAGGAGCCTGATCTCGCCA TCACCATGTTCAAAAAGCACAAGTTGTATGACGACATGATTCGCCTGGTGGGGAAGCACCATCCAGACCT CCTCAGCGACACACACCTTCACCTGGGCAAGGAGCTGGAGGCAGAAGGCCGACTGCAGGAGGCTGAGTAT CACTACCTTGAGGCCCAGGAATGGAAGGCAACTGTGAACATGTACCGCTCCAGCGGGCTTTGGGAGGAGG CCTACCGGGTGGCCAAAGCCCATGGAGGAGCCAATGCCCACAAACACGTGGCCTATCTGTGGGCCAAAAG CCTGGGAGGAGAGGCTGCAGTTAGACTACTTAACAAGCTGGGACTTCTGGAGGCCACCATTGACCATGCT GCTGACAACTGCTCCTTTGAGTTTGCCTTTGAACTCTCTCGGCTAGCCTTCAAGCACAAAGCCCCAGAGA TTCATCTCAAATACGCCATGTACCTGGAAGATGAGGGCAAATTTGAAGAGGCTGAAGCTGAATTCATCCG AGCTGGTAAACCCAAAGAGGCGGTCCTCATGTTTGTCCACAACCAGGACTGGGAGGCAGCTCAGCGCGTG GCTGAGGCCCACGATCCTGACAGCGTTGCTGAGGTACTTGTAGGTCAAGCCCGTGGGGCCTTGGAGGAGA AGGACTTTCAGAAGGCAGAAGGGTTACTACTTCGGGCCCAGAGACCAGGTCTGGCTCTCAATTATTATAA GGAGGCTGGACTCTGGAGCGACGCTCTGAGAATCTGCAAGGACTATGTGCCTGGCCAGCTAGAGGCCCTA CAGGAAGAGTATGAGCGAGAAGCTACCAAGAAGGGAGGCAGAGGGGTGGAGGGACTTGTAGAGCAAGCAC GGCAGTGGGAACAGGCTGGAGAGTATAGCCGTGCAGTGGACTGCTACCTCAAAGTTCGCGACTCAGGAAG CAGTGGCCTGATGGAGAAGTGCTGGATGAAGGCGGCTGAACTGTCCATCAAGTTCCTGCCTCCCCAGCGC AGTCTGGAAGTCGTCCGGGTTGTAGGGCCCCAGCTGATCGGGATTGGAAAGCACAGTGCTGCTGCAGAAC TCTATCTGAACCTGGACCTTGTCAAAGAAGCAATCGATGCTTTCATTGAGGGGGAAGAGTGGAACAAGGC CAAGCGCGTGGCCAAAGAGCTAGATCCCCGGTATGAGGACTATGTGGATCAGCACTATAAGGAGTTCCTC AAGAACCAGGGCAAAGTGGATTCGCTGGTGGGTGTGGACGTAGTAGCTGCCTTGGACCTGTATGTGGAGC AGGGCCAGTGGGATAAATGCATTGAAACAGCTACCAAGCAGAACTACAAGATTCTGCACAAGTATGTGGC TTTGTATGCAACTCATCTGATCCGAGAAGGTGGCTATGCCCAGGCACTGGCCCTCTATGTGCAACACGGA GCCCCTGCAAACCCACAGAATTTCAACATCTACAAAAGGATCTTCACTGACATGGTTAGCTCTCCTGGGA CCAACAATGCTGAGGCCTACCATAGCTGGGCTGATCTTCGGGATGTCCTCTTCAACCTGTGTGAAAACCT GGTGAAGTCCAGTGAGGCAAACTCTGCAGCGCATGAGGAGTTTGAGATGATGCTGCTGATCTCTCATTAC TACGCTACGCGATCTGCAGCCCAGAGTATCAAACAGCTGGAAACCGTAGCTGCCAGGCTTTCTGTTTCGC TCTTGCGCCACACCCAGTTACTCCCTGCAGACAAGGCCTTTTATGAAGCGGGCACTGCTGCCAAGGAAGT TGGCTGGGAGAACATGGCTTTCATTTTCCTCAATCGGTTCTTGGATCTGACTGATGCAATCGAAGAAGGG ACCCTGGATGCCCTGGACCATTCAGATTTTCAGGATACTGACATTCCCTTTGAGGTGCCGCTCCCAGCCA AGCAGCACGTCCCGGAGGCCCAGAGAGAAGAGGTCCGAGACTGGGTGCTCACAGTCTCGATGGACCAGAG ACTGGAGCAGGTTCTGCCCCGGGATGAGCGAGGTGTCTATGAGGCTTCCCTAGTTGCCGCGAGCACTGGA GTTCGGGCACTGCCCTGCCTCATCACAGGTTACCCCATTTTGAGGAACAAAATTGAATTTAAGCGGCCTG GGAAGGCTGCTAACAAAGACAACTGGAACAAGTTTCTTATGGCCATCAAGACCTCTCACAGCCCAGTGTG CCAGGACGTGCTCAAGTTCATCAGCCAGTGGTGCGGTGGTCTCCCTAGCACCAGCTTTTCCTTTCAGTGA
Translation (1749 aa): MQLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVK GMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAEYVIVFGLAEGKVRLANT KTNKSSTIYGTESYVVALTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSI VAAGCDRRIVAYGKEGHVLQTFDYSRDPQEREFTTAAASPGGQSVVLGSYDRLRVFNWSPRRSIWEEAKP KEIANLYTVTALAWKRDGSRLCAGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLK SHYGYEVEEVKILGKERYLVAHTSDTLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLV EYGSNDSLGSVRTEFMNPHLISVRINERCQRGMEDNKKLAYLVDIKTIAIVDLIGGYNIGTISHESRVDW LELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYVQWVPGSDVLVAQNRNSLCVWYNIEAPERVTM SSIRGDVVGLERGGGKTEVMVTEGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMWKT LSKLALEARQLHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEM IFLEQNAVEEAMDMYQELHRWEECIAVAEAKGHPALEKLRRDYYQWLMDTQQEERAGELQESQGDGLAAI SLYLKAGLPAKAARLVLTREELLANTELVEHITTALIKGELYERAGDLFEKIRNPQRALECYCKGNAFMK AVELARLAFPVEVVRLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAIYILDLQDRNT ASKYYPRVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKLAMKCMRPEDVSVLYITQAQE MEKQGKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELEAEGRLQEAEY HYLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEATIDHA ADNCSFEFAFELSRLAFKHKAPEIHLKYAMYLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRV AEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPGQLEAL QEEYEREATKKGGRGVEGLVEQARQWEQAGEYSRAVDCYLKVRDSGSSGLMEKCWMKAAELSIKFLPPQR SLEVVRVVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFIEGEEWNKAKRVAKELDPRYEDYVDQHYKEFL KNQGKVDSLVGVDVVAALDLYVEQGQWDKCIETATKQNYKILHKYVALYATHLIREGGYAQALALYVQHG APANPQNFNIYKRIFTDMVSSPGTNNAEAYHSWADLRDVLFNLCENLVKSSEANSAAHEEFEMMLLISHY YATRSAAQSIKQLETVAARLSVSLLRHTQLLPADKAFYEAGTAAKEVGWENMAFIFLNRFLDLTDAIEEG TLDALDHSDFQDTDIPFEVPLPAKQHVPEAQREEVRDWVLTVSMDQRLEQVLPRDERGVYEASLVAASTG VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGGLPSTSFSFQ
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