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Report for CCDS44374.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44374.2 Public Homo sapiens 10 WASHC2C 24 110 108 CCDS HistoryNCBI Gene:253725Re-query CCDS DB by CCDS ID:44374.2Re-query CCDS DB by GeneID:253725See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 44374.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44374.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374362.6 ENSP00000363482.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374362.6Link to Ensembl Protein Viewer:ENSP00000363482.2Re-query CCDS DB by Nucleotide ID:ENST00000374362Re-query CCDS DB by Protein ID:ENSP00000363482
Original member Current member NCBI NM_015262.3 NP_056077.2 Accepted alive Link to Nucleotide Sequence:NM_015262.3Link to Protein Sequence:NP_056077.2Re-query CCDS DB by Nucleotide ID:NM_015262Re-query CCDS DB by Protein ID:NP_056077Link to BLAST:NP_056077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056077.2 1320 Q9Y4E1-4 1320 100% 0 0

Chromosomal Locations for CCDS 44374.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 45727318 45727320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45727417 45727539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45728862 45729026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45737983 45738045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45740073 45740246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45743390 45743483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45744821 45744882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45746600 45746647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45750096 45750206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45750751 45750838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45751482 45751553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45752588 45752706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45753180 45753237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45754486 45754545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45754936 45755115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45757012 45757139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45759315 45759401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45763388 45763489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45765679 45765810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45769449 45769618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45773256 45773358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45777273 45777425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45778953 45779135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45784565 45784693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45784821 45784901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45785509 45785631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45787035 45787247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45788871 45789491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45790356 45790533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45792261 45792400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGATGAACCGGACGACCCCCGACCAGGAGCTGGTGCCGGCGTCGGAGCCCGTGTGGGAGCGGCCGTGGT
CGGTGGAGGAGATCCGCAGGAGCAGCCAGAGCTGGTCGCTGGCGGCCGACGCGGGCCTACTACAGTTTCT
ACAGGAATTCTCACAGCAAACTATCTCTAGGACCCATGAAATCAAGAAACAAGTGGACGGACTAATCCGG
GAAACCAAAGCCACAGATTGTCGCCTGCATAATGTCTTCAATGACTTCCTTATGCTCTCTAATACCCAGT
TCATAGAGAATCGTGTATATGATGAAGAAGTGGAGGAGCCAGTACTCAAGGCTGAGGCAGAAAAAACAGA
GCAGGAGAAGACACGAGAGCAGAAAGAAGTAGATCTCATTCCTAAAGTCCAGGAGGCTGTGAACTATGGC
TTACAAGTATTGGACAGTGCCTTTGAGCAACTTGATATCAAAGCAGGAAACTCAGACTCCGAGGAAGATG
ATGCTAATGGGCGGGTGGAACTGATCCTTGAACCAAAGGATCTATACATTGATCGTCCTTTACCATATCT
CATTGGGTCAAAGCTGTTCATGGAACAAGAAGATGTAGGTCTTGGAGAGCTGTCCAGTGAAGAAGGCTCT
GTAGGCAGTGATCGTGGCAGTATTGTGGACACTGAGGAAGAGAAAGAAGAGGAGGAGTCAGATGAAGATT
TTGCCCATCACAGTGACAATGAACAAAACCAGCACACCACACAAATGAGTGATGAGGAAGAGGATGATGA
TGGCTGTGACCTTTTTGCTGACTCTGAGAAGGAGGAGGAAGATATTGAGGACATTGAAGAAAATACTAGA
CCTAAAAGAAGCAGACCTACATCGTTTGCAGATGAGCTGGCTGCCCGCATCAAGGGGGATGCCATGGGTC
GAGTGGACGAGGAGCCGACAACCTTACCCTCAGGAGAAGCAAAACCTCGGAAGACACTCAAAGAGAAGAA
GGAAAGGAGAACTCCTTCAGACGATGAAGAGGATAACTTATTCGCACCCCCCAAGCTGACCGACGAGGAC
TTCTCGCCATTTGGCTCTGGAGGTGGCCTGTTCAGTGGCGGCAAGGGGCTATTTGATGATGAGGACGAGG
AGAGTGACCTCTTCACGGAAGCCTCCCAGGATCGGCAAGCTGGAGCCTCTGTTAAGGAGGAGTCTTCATC
ATCCAAACCTGGAAAGAAAATCCCAGCAGGAGCTGTTTCTGTATTTTTAGGAGACACGGATGTGTTTGGT
GCTGCCTCCGTTCCATCACTGAAGGAGCCACAGAAGCCTGAGCAGCCCACTCCAAGGAAAAGCCCCTATG
GTCCCCCTCCCACTGGCCTCTTTGATGATGATGATGGTGATGATGATGACGACTTTTTCTCGGCACCCCA
CAGCAAACCTTCTAAAACACGCAAAGTCCAATCCACTGCCGATATCTTTGGTGACGAAGAAGGAGATCTG
TTCAAAGAAAAAGCCGTAGCATCGCCAGAAGCCACTGTGAGTCAGACAGATGAAAATAAAGCAAGAGCAG
AAAAAAAGGTTACCTTATCTTACAGCAAAAATCTCAAGCCCTCATCAGAAACAAAGACTCAAAAAGGCTT
ATTTTCAGATGAGGAGGACTCTGAGGATTTGTTTTCTTCTCAAAGTGCGAGTAACTTAAAAGGTGCATCT
CTGCTGCCTGGCAAGCTCCCCACGTCGGTTTCCCTGTTTGATGATGAAGATGAAGAGGATAATCTTTTTG
GGGGTACAGCTGCTAAGAAGCAGACATTGTCTCTACAAGCTCAGAGAGAAGAGAAAGCAAAAGCCTCCGA
GCTCTCCAAAAAGAAAGCATCTGCCCTGTTGTTCAGCAGTGATGAGGAGGACCAGTGGAATATTCCTGCT
TCACAGACCCACTTAGCATCTGACAGCAGGTCTAAAGGAGAACCCAGGGATTCTGGGACCCTCCAGAGCC
AGGAGGCCAAGGCTGTGAAAAAGACCAGTCTCTTTGAGGAAGACAAAGAAGATGATCTTTTTGCCATTGC
CAAGGACAGCCAAAAGAAGACCCAGAGAGTGTCACTCCTCTTTGAAGACGATGTTGATAGCGGAGGCTCT
CTGTTTGGCTCTCCTCCCACATCTGTTCCTCCTGCAACAAAGAAAAAAGAGACTGTCTCTGAGGCACCAC
CTTTGCTGTTCAGCGATGAAGAAGAGAAGGAGGCACAACTTGGAGTGAAGTCTGTGGATAAGAAGGTTGA
GAGTGCCAAGGAGTCATTAAAATTTGGGAGAACTGATGTGGCTGAGTCAGAAAAGGAAGGACTTTTGACT
AGATCTGCTCAGGAAACAGTCAAGCATTCTGATTTATTTTCTTCATCATCCCCATGGGACAAAGGAACCA
AGCCTAGAACCAAAACTGTTCTTAGCTTGTTTGATGAGGAAGAGGATAAAATGGAAGATCAAAACATTAT
CCAGGCTCCACAGAAAGAAGTAGGAAAGGGCTGCGATCCTGATGCCCACCCCAAGAGCACAGGTGTCTTC
CAGGATGAAGAGCTGCTTTTCAGCCACAAGCTCCAAAAGGACAATGACCCAGATGTTGACCTTTTTGCTG
GCACCAAAAAAACCAAGCTGTTAGAGCCAAGTGTTGGGAGCCTGTTTGGGGATGATGAAGATGATGATCT
TTTCAGCTCTGCCAAGTCCCAGCCTTTGGTACAAGAGAAAAAGAGAGTAGTGAAAAAAGACCACTCTGTT
AACTCTTTCAAAAACCAGAAACATCCTGAATCCATTCAAGGTAGTAAAGAAAAAGGCATATGGAAGCCGG
AAACACCTCAGGCAAATTTAGCGATCAACCCAGCGGCCTTGCTGCCCACAGCGGCTTCCCAGATCTCTGA
AGTAAAGCCTGTTTTGCCAGAATTGGCTTTTCCTTCATCTGAACACAGAAGGAGCCACGGTCTGGAAAGT
GTGCCTGTCCTTCCCGGGAGTGGGGAGGCCGGTGTGAGTTTTGATCTTCCAGCTCAGGCAGACACCTTAC
ACAGTGCAAACAAGAGCCGTGTCAAGATGAGAGGGAAGCGTAGACCGCAGACCCGTGCAGCTAGGCGGCT
GGCTGCTCAGGAGTCCAGCGAGGCTGAGGACATGAGCGTCCCCAGAGGACCCATTGCACAGTGGGCTGAT
GGCGCCATTTCCCCAAATGGCCATCGGCCACAGCTCAGAGCAGCCAGTGGAGAAGACAGCACTGAGGAGG
CCCTGGCAGCTGCCGCTGCACCTTGGGAAGGTGGTCCTGTGCCTGGAGTGGACACAAGCCCCTTTGCAAA
GTCTCTGGGTCATTCCAGAGGGGAGGCTGACCTTTTTGATTCTGGGGACATTTTTTCCACGGGCACTGGA
TCTCAGTCCGTGGAGAGAACAAAACCCAAGGCAAAGATAGCAGAGAATCCTGCCAACCCACCAGTGGGTG
GTAAAGCAAAGAGCCCCATGTTTCCTGCTCTAGGCGAGGCCAGCAGTGATGATGATCTCTTTCAGTCTGC
TAAACCAAAACCAGCAAAGAAAACAAATCCCTTTCCTCTCCTGGAAGATGAGGATGACCTCTTTACAGAT
CAGAAAGTCAAGAAGAATGAGACAAAATCCAGTAGTCAGCAGGATGTCATATTAACAACACAAGATATTT
TTGAGGATGATATATTTGCTACGGAAGCAATTAAACCCTCTCAGAAAACCAGAGAGAAGGAGAAAACATT
GGAATCTAATTTATTTGATGATAACATTGATATCTTTGCTGACTTAACTGTAAAACCAAAAGAAAAGTCC
AAAAAGAAAGTGGAAGCCAAGTCTATATTTGATGATGATATGGATGACATCTTCTCCACTGGTATCCAGG
CTAAGACAACCAAACCAAAAAGCCGATCTGCACAGGCCGCACCTGAACCAAGATTTGAACACAAGGTGTC
CAACATCTTTGATGATCCCCTGAATGCCTTTGGAGGCCAGTAG

Translation (1320 aa):
MMNRTTPDQELVPASEPVWERPWSVEEIRRSSQSWSLAADAGLLQFLQEFSQQTISRTHEIKKQVDGLIR
ETKATDCRLHNVFNDFLMLSNTQFIENRVYDEEVEEPVLKAEAEKTEQEKTREQKEVDLIPKVQEAVNYG
LQVLDSAFEQLDIKAGNSDSEEDDANGRVELILEPKDLYIDRPLPYLIGSKLFMEQEDVGLGELSSEEGS
VGSDRGSIVDTEEEKEEEESDEDFAHHSDNEQNQHTTQMSDEEEDDDGCDLFADSEKEEEDIEDIEENTR
PKRSRPTSFADELAARIKGDAMGRVDEEPTTLPSGEAKPRKTLKEKKERRTPSDDEEDNLFAPPKLTDED
FSPFGSGGGLFSGGKGLFDDEDEESDLFTEASQDRQAGASVKEESSSSKPGKKIPAGAVSVFLGDTDVFG
AASVPSLKEPQKPEQPTPRKSPYGPPPTGLFDDDDGDDDDDFFSAPHSKPSKTRKVQSTADIFGDEEGDL
FKEKAVASPEATVSQTDENKARAEKKVTLSYSKNLKPSSETKTQKGLFSDEEDSEDLFSSQSASNLKGAS
LLPGKLPTSVSLFDDEDEEDNLFGGTAAKKQTLSLQAQREEKAKASELSKKKASALLFSSDEEDQWNIPA
SQTHLASDSRSKGEPRDSGTLQSQEAKAVKKTSLFEEDKEDDLFAIAKDSQKKTQRVSLLFEDDVDSGGS
LFGSPPTSVPPATKKKETVSEAPPLLFSDEEEKEAQLGVKSVDKKVESAKESLKFGRTDVAESEKEGLLT
RSAQETVKHSDLFSSSSPWDKGTKPRTKTVLSLFDEEEDKMEDQNIIQAPQKEVGKGCDPDAHPKSTGVF
QDEELLFSHKLQKDNDPDVDLFAGTKKTKLLEPSVGSLFGDDEDDDLFSSAKSQPLVQEKKRVVKKDHSV
NSFKNQKHPESIQGSKEKGIWKPETPQANLAINPAALLPTAASQISEVKPVLPELAFPSSEHRRSHGLES
VPVLPGSGEAGVSFDLPAQADTLHSANKSRVKMRGKRRPQTRAARRLAAQESSEAEDMSVPRGPIAQWAD
GAISPNGHRPQLRAASGEDSTEEALAAAAAPWEGGPVPGVDTSPFAKSLGHSRGEADLFDSGDIFSTGTG
SQSVERTKPKAKIAENPANPPVGGKAKSPMFPALGEASSDDDLFQSAKPKPAKKTNPFPLLEDEDDLFTD
QKVKKNETKSSSQQDVILTTQDIFEDDIFATEAIKPSQKTREKEKTLESNLFDDNIDIFADLTVKPKEKS
KKKVEAKSIFDDDMDDIFSTGIQAKTTKPKSRSAQAAPEPRFEHKVSNIFDDPLNAFGGQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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