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Report for CCDS55373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55373.1 Public Homo sapiens X TXLNG 24 110 108 CCDS HistoryNCBI Gene:55787Re-query CCDS DB by CCDS ID:55373.1Re-query CCDS DB by GeneID:55787See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398155.4 ENSP00000381222.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398155.4Link to Ensembl Protein Viewer:ENSP00000381222.4Re-query CCDS DB by Nucleotide ID:ENST00000398155Re-query CCDS DB by Protein ID:ENSP00000381222
Original member Current member NCBI NM_001168683.2 NP_001162154.1 Accepted alive Link to Nucleotide Sequence:NM_001168683.2Link to Protein Sequence:NP_001162154.1Re-query CCDS DB by Nucleotide ID:NM_001168683Re-query CCDS DB by Protein ID:NP_001162154Link to BLAST:NP_001162154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162154.1 396 Q9NUQ3-2 396 100% 0 0

Chromosomal Locations for CCDS 55373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 16786488 16786589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16828094 16828264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16829576 16829770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16832623 16832742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16834283 16834357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16837593 16837685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16839821 16839916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16841428 16841766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCGACGCGGGTAGAGGAGGCAGCGCGGGGAAGAGGCGGCGGCGCCGAAGAGGCGACTGAGGCCGGAC
GGGGCGGACGGCGACGCAGCCCGCGGCAGAAGCTGGAGGAGAGCAGGAGTGTTCAGAAGCAAATGAAGAT
CCTGCAGAAGAAGCAAGCCCAGATTGTGAAAGAGAAAGTTCACTTGCAGAGTGAACATAGCAAGGCTATC
TTGGCAAGAAGCAAGCTAGAATCTCTTTGCAGAGAACTTCAGCGTCACAATAAGACGTTAAAGGAGGAAA
ATATGCAGCAGGCACGAGAGGAAGAAGAACGACGTAAAGAAGCAACTGCACATTTCCAGATTACCTTAAA
TGAAATTCAAGCCCAGCTGGAGCAGCATGACATCCACAACGCCAAACTCCGACAGGAAAACATTGAGCTG
GGGGAGAAGCTAAAGAAGCTCATCGAACAGTACGCACTGAGGGAAGAGCACATTGATAAGGTGTTCAAAC
ATAAGGAACTGCAACAGCAGCTCGTGGATGCCAAACTGCAGCAAACGACACAACTGATAAAAGAAGCTGA
TGAAAAACATCAGAGAGAGAGAGAGTTTTTATTAAAAGAAGCGACAGAATCGAGGCACAAATACGAACAA
ATGAAACAGCAAGAAGTACAACTAAAACAGCAGCTTTCTCTTTATATGGATAAGTTTGAAGAATTCCAGA
CTACCATGGCAAAAAGCAATGAACTGTTTACAACCTTCAGACAGGAAATGGAAAAGATGACAAAGAAAAT
TAAAAAACTGGAAAAAGAAACAATAATTTGGCGTACCAAATGGGAAAACAATAATAAAGCACTTCTGCAA
ATGGCTGAAGAGAAAACAGTCCGTGATAAAGAGTACAAGGCCCTTCAAATAAAACTGGAACGGTTAGAGA
AGCTGTGCAGGGCTCTTCAGACAGAAAGGAATGAGCTCAATGAGAAGGTGGAAGTCCTGAAAGAGCAGGT
ATCCATCAAAGCGGCCATCAAAGCGGCGAACAGGGATTTAGCAACACCTGTGATGCAGCCCTGTACTGCC
CTGGATTCTCACAAGGAGCTGAACACTTCCTCGAAAAGAGCCCTGGGAGCGCACCTGGAGGCTGAGCCCA
AGAGTCAGAGAAGCGCTGTGCAAAAGCCCCCGTCCACAGGCTCTGCTCCGGCCATCGAGTCGGTTGACTA
A

Translation (396 aa):
MATRVEEAARGRGGGAEEATEAGRGGRRRSPRQKLEESRSVQKQMKILQKKQAQIVKEKVHLQSEHSKAI
LARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLNEIQAQLEQHDIHNAKLRQENIEL
GEKLKKLIEQYALREEHIDKVFKHKELQQQLVDAKLQQTTQLIKEADEKHQREREFLLKEATESRHKYEQ
MKQQEVQLKQQLSLYMDKFEEFQTTMAKSNELFTTFRQEMEKMTKKIKKLEKETIIWRTKWENNNKALLQ
MAEEKTVRDKEYKALQIKLERLEKLCRALQTERNELNEKVEVLKEQVSIKAAIKAANRDLATPVMQPCTA
LDSHKELNTSSKRALGAHLEAEPKSQRSAVQKPPSTGSAPAIESVD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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