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Report for CCDS40494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40494.1 Public Mus musculus 8 Meak7 23 108 98 CCDS HistoryNCBI Gene:74347Re-query CCDS DB by CCDS ID:40494.1Re-query CCDS DB by GeneID:74347See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40494.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049156.6 ENSMUSP00000044430.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049156.6Link to Ensembl Protein Viewer:ENSMUSP00000044430.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049156Re-query CCDS DB by Protein ID:ENSMUSP00000044430
Original member Current member NCBI NM_028883.2 NP_083159.1 Accepted alive Link to Nucleotide Sequence:NM_028883.2Link to Protein Sequence:NP_083159.1Re-query CCDS DB by Nucleotide ID:NM_028883Re-query CCDS DB by Protein ID:NP_083159Link to BLAST:NP_083159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083159.1 455 Q8K0P3-1 455 100% 0 0

Chromosomal Locations for CCDS 40494.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 119761714 119761830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119762292 119762471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119763936 119764054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119768066 119768494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119771241 119771385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119772374 119772604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 119773272 119773418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGGGAATGCCAAGAGCCTGTCGGGCCAGAAGATGGCCTCAAGGTTCTTGCCCGAGGAGCAGGCTGAGG
TAGACAAGCTGTTTGATGTCCTGTCATCTAGTGAAGGCGGTGTGGCAACGGGGACATTCTCTCTGGAGGC
GATGAAGAGCCATGTCAAGGAGGCCCTCCCCCCAGCGATGGTCACCAGACTGTATAACGGCATGCAGAGG
GTGAAGCCAACCGACAGGACACTCGGGAGCTGCAGGAGTGTTTCCAGAGAGCAATTCACTGCATTCCTGT
CCCAGCTGTTGAGAGGGAGCTGTGAGGAAAAAGGCCTAATGGTTATGAACATGATCTCAGATGCAGAGGG
TCCTACAAAGACCAGAGATGTCCAGAAGTTCACAGAGGACCTGGTGGCCTCTGTGGCGCACGTGCTGACC
CACCGGCATGAGCTTCGAGGCTGGACCTGCAGGAAATCCGAGGTGCCCCCTGACAGTATGCAGGCCATGG
TCGCCCAGCTGCTCTCTGAGATGAAGTTTCAAGATGGCTACAAGTTCCAGGGCCCTCAGTGCCTGGACCA
GGTCTGCGACCAAGCCATGATCGAGGAGTGGGTGTTCCACGTCCCTCACGTGGGCATGTTCCTGAGCGTG
GTCGTCCACAGGGGCCTGTGCCTCCTGGGTTCATCCTTTGATCCGTCCACGCTGGTCCCCGAGTGCCTCG
CGGACCAAGGTGGCCGGTTCGAGAGCATCCTGGATGTGCTGTCCGTCATCTACCTCAGCTCCCACCTGGC
CCCGGAGCATCGGCAACGCTGGCGCCTGCTGTTCTCCACGCAGCTCCACGGGCAGAGCTTCTCCCAGCTC
TGCAGCCACATCACCAGCCAGGGGCCCAGCCTGCTTGTCCTTGAGGACAGGGATGGCTACGTCTTTGGTG
GCTTCGCCTCCTGCTCTTGGGAAGTTAAGCCTCAGTTCCAAGGGGACAACAGATGTTTCCTGTTCTCCAT
TGCCCCCAGAATGGCCACGCACCTGCACACGGGCTACAATAACCACTTCATGTACTTGAATTACGGACAG
CAAACCATGCCTAATGGACTGGGCATGGGTGGGCAGCACCATTACTTTGGGCTTTGGGTGGCTGCCGACT
TTGGGAAAGGACACAGCAAGGCGAAGCCAGCGTGCACCACCTACAACAGCCCACAGCTCTCTGCCCAGGA
GGACTTCCTGTTCGATAAGATGGAGGTGTGGGGACTTGGCAACCTCTTAGAGGAATATGAGGGCAAGAAC
AAGAAGAGCGTCCTGGACTCAAATCCCGAAGCCCGTAGCCTGTTGGAGATCAGCGGACGGGCTCGGCACA
GCGAGGGACTGCGGGAAGTCCCCAGGGATGAGGACTGA

Translation (455 aa):
MGNAKSLSGQKMASRFLPEEQAEVDKLFDVLSSSEGGVATGTFSLEAMKSHVKEALPPAMVTRLYNGMQR
VKPTDRTLGSCRSVSREQFTAFLSQLLRGSCEEKGLMVMNMISDAEGPTKTRDVQKFTEDLVASVAHVLT
HRHELRGWTCRKSEVPPDSMQAMVAQLLSEMKFQDGYKFQGPQCLDQVCDQAMIEEWVFHVPHVGMFLSV
VVHRGLCLLGSSFDPSTLVPECLADQGGRFESILDVLSVIYLSSHLAPEHRQRWRLLFSTQLHGQSFSQL
CSHITSQGPSLLVLEDRDGYVFGGFASCSWEVKPQFQGDNRCFLFSIAPRMATHLHTGYNNHFMYLNYGQ
QTMPNGLGMGGQHHYFGLWVAADFGKGHSKAKPACTTYNSPQLSAQEDFLFDKMEVWGLGNLLEEYEGKN
KKSVLDSNPEARSLLEISGRARHSEGLREVPRDED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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