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Report for CCDS21808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21808.1 Public Mus musculus 7 Ubfd1 23 108 98 CCDS HistoryNCBI Gene:28018Re-query CCDS DB by CCDS ID:21808.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033158.5 ENSMUSP00000033158.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033158.5Link to Ensembl Protein Viewer:ENSMUSP00000033158.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033158Re-query CCDS DB by Protein ID:ENSMUSP00000033158
Original member Current member NCBI NM_138589.2 NP_613055.2 Accepted alive Link to Nucleotide Sequence:NM_138589.2Link to Protein Sequence:NP_613055.2Re-query CCDS DB by Nucleotide ID:NM_138589Re-query CCDS DB by Protein ID:NP_613055Link to BLAST:NP_613055.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_613055.2 368 Q78JW9 368 100% 0 0

Chromosomal Locations for CCDS 21808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 122067283 122067484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122067664 122067993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122068781 122068989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122071702 122071767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122071910 122072015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122076108 122076190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 122078450 122078560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGCTAAAGCGTGGCAGGGGCCGGCCCGGGAAGCGGAGGAGGCGGGTCTCCATAGAAACCTCCACCTGTT
TCCGGCCAGCCTGTGTGAAATTAGGGGCTGGTGCGGGGGCCAATCTCCGCCAGCTCGCTTCTTCCCGGCG
GCCCCTGCGGTCGTGGTGGGTGTTGTACACAATCATCATGGCGGCGGCCGGAGCCCCGGATGGCATGGAG
GAGCCAGGCATGGACACGGAGGCCGAGGCTGTGGCCACCGAGGCGCCCGCACGGCCCCTCAACTGCGTGG
AGGCCGAAGCAGCCGTAGGGGCAGCGGCGGAGGACTCCTGCGACGCGCGAGGCAACCTGCAGCCGGCCCC
GGCCCAGCCCCCTGGGGACCCTGCGGCCCAGGCCTCGGTCAGCAACGGCGAGGACGCGGGCGGCGGTGTG
GGCAAGGAGCTGGTGGATCTGAAGATAATCTGGAACAAGACCAAACACGACGTGAAGGTCCCTCTGGACA
GCACGGGGTCCGAGCTAAAGCAGAAGATTCACTCCATTACAGGTCTCCCACCTGCCATGCAGAAGGTCAT
GTATAAAGGACTTGTTCCTGAAGACAAGACTTTGAGAGAAATAAAAGTGACCAGTGGGGCCAAGATCATG
GTGGTTGGTTCTACTATAAATGATGTTTTAGCAGTAAACACCCCGAAAGATGCTGCCCAGCAGGATGCAA
AGGCTGAAGAAAACAAGAAGGAGCCCCTCTGCAGGCAGAAGCAACACAGGAAAGTGTTGGACAAGGGAAA
GCCTGAAGATGTGATGCCGTCTGTTAAGGGTGCCCAGGAGCGCCTGCCAACGGTACCCTTGTCTGGCATG
TACAATAAGTCTGGCGGGAAAGTGAGGCTCACCTTTAAGCTAGAGCAAGACCAGCTGTGGATCGGCACTA
AAGAGCGGACTGAGAAACTGCCCATGGGCTCCATTAAAAATGTGGTCAGTGAACCTATTGAAGGACATGA
AGACTACCACATGATGGCGTTTCAGTTGGGCCCCACGGAAGCCTCTTACTACTGGGTGTACTGGGTTCCA
ACTCAATATGTGGATGCAATCAAAGACACTGTGCTGGGCAAGTGGCAGTATTTTTGA

Translation (368 aa):
MLKRGRGRPGKRRRRVSIETSTCFRPACVKLGAGAGANLRQLASSRRPLRSWWVLYTIIMAAAGAPDGME
EPGMDTEAEAVATEAPARPLNCVEAEAAVGAAAEDSCDARGNLQPAPAQPPGDPAAQASVSNGEDAGGGV
GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIM
VVGSTINDVLAVNTPKDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGM
YNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVP
TQYVDAIKDTVLGKWQYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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