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Report for CCDS15818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15818.1 Public Mus musculus 2 Stkld1 23 108 98 CCDS HistoryNCBI Gene:279029Re-query CCDS DB by CCDS ID:15818.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055406.8 ENSMUSP00000062967.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055406.8Link to Ensembl Protein Viewer:ENSMUSP00000062967.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055406Re-query CCDS DB by Protein ID:ENSMUSP00000062967
Original member NCBI NM_198628.2 NP_941030.2 Updated not alive Link to Nucleotide Sequence:NM_198628.2Link to Protein Sequence:NP_941030.2Re-query CCDS DB by Nucleotide ID:NM_198628Re-query CCDS DB by Protein ID:NP_941030
Current member NCBI NM_198628.3 NP_941030.2 Accepted alive Link to Nucleotide Sequence:NM_198628.3Link to Protein Sequence:NP_941030.2Re-query CCDS DB by Nucleotide ID:NM_198628Re-query CCDS DB by Protein ID:NP_941030Link to BLAST:NP_941030.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941030.2 662 Q80YS9 662 100% 0 0

Chromosomal Locations for CCDS 15818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26935323 26935400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26937981 26938025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26939971 26940045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26941011 26941115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26943131 26943201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26943877 26943992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26945442 26945560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26945764 26945927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26946597 26946727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26947244 26947327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26949312 26949428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26950025 26950165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26950554 26950682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26951420 26951548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26951622 26951750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26952651 26952791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26952956 26953035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26953257 26953391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGCTGAATCCTGGAGCCTTAGGGGTGAACCTGGTGGTGGAAGAACTGGAAACTGAAACCAAGTTCTTGA
TAAAGCAGGTGGAGTGTATTGATGAGCACCATGCCAACAAGGCCCTGGAGGAGCTGATGCCCCTGCTGAA
GCTCCAACACCCCAATCTCTCTCTGTACCATGAGATGTTCATCATGTGGAACAATGAGATCTCCTCTCTG
TTCCTCTGCCTGGTGATGGATTATTACTCCCAAGGAACATTCCAGAATATCATGGAGAATAAGAGGAAGT
TAAAAGCAGTTGTTGACACTGAGTGGATGCATACCATGCTAAGCCAGGTATTGGATGCCATCGAGTACCT
ACATAAGTTGAACATCGTTCACAGGAACCTCAAGCCTTCCAACATCGTCCTTGTTAACAGTGGCTACTGT
AAACTGCAGGATATGAGCTCCCAGGCACTGATGACCCACGAAGCTAAGTGGAATGTCCGAGCAGAAGAAG
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAGCTCTCAAATTCTCCTTCTCCACCAAATCCGACATCTG
GTCTCTGGGCTGCATCATTCTAGACATGGCCACTTGCTCCTTCCTGAACGACACAGAAGCCATGCAACTG
CGGAAGGCCATCCGCCATCATCCAGGCAGCCTGAAGCCCATCCTGAAAACCATGGAGGAGAAGCAAATCC
CTGGTACAGATGTCTACTATTTGCTTCTGCCCTTCATGTTGCATATCAACCCCTCCGATCGACTGGCAAT
CAAGGATGTGATGCAAGTCACCTTCATGAGCAACTCCTTCAAAAGCTCCTCTGTTGCGCTGAATATGCAG
CGGCAGAAGGTCCCCATCTTCATCACTGACGTGCTGCTTGAAGGCAACATGGCCAACATCTTAGATGTCA
TGCAGAATTTCTCCAGTCGACCAGAGGTCCAGCTCAGAGCCATTAACAAGTTGTTGACAATGCCAGAGGA
CCAGCTAGGGCTGCCATGGCCCACAGAGCTGCTGGAAGAGGTGATCAGCATCATAAAGCAGCATGGGCGG
ATCCTGGATATTCTGCTCAGCACCTGCTCCCTTCTGCTGCGTGTTCTTGGCCAAGCACTGGCAAAGGACC
CAGAAGCTGAGATCCCAAGGAGCAGTTTGATCATCTCCTTCCTGATGGATACCTTGCGGAGCCATCCTAA
CTCTGAAAGGCTTGTTAATGTGGTCTACAACGTGCTTGCCATTATTTCCAGCCAAGGACAGATCTCAGAA
GAGCTGGAAGAGGAGGGGTTGTTTCAGCTTGCCCAAGAGAACCTGGAGCACTTCCAAGAGGACAGGGACA
TCTGCCTCTCTATCCTGAGCCTGCTCTGGTCCCTCCTGGTAGATGTTGTCACTGTGGACAAAGAGCCCTT
GGAGCAGCTCTCTGGCATGGTCACCTGGGTGCTGGCTACTCATCCGGAGGACGTGGAAATAGCAGAGGCT
GGCTGTGCGGTGCTCTGGCTGCTGTCCTTGTTGGGCTGCATAAAGGAGAGTCAGTTTGAGCAGGTGGTAG
TGCTGCTCCTGAGAAGCATCCAGCTGTGCCCTGGCAGAGTACTGCTGGTGAACAATGCATTCCGTGGCTT
GGCCAGCCTCGCAAAGGTGTCCGAACTGGTGGCCTTCCGAATAGTAGTACTGGAAGAGGGCAGCAGCGGC
CTCCACCTCATCCAAGATATCTACAAGCTCTACAAGGATGACCCTGAGGTGGTGGAGAACCTCTGCATGC
TGTTGGCCCATCTGACCTCCTACAAGGAGATCCTGCCAGAGATGGAGTCTGGAGGCATCAAAGACCTAGT
CCAGGTGATCCGGGGGCGCTTTACCTCCAGCCTGGAGCTGATTTCTTACGCTGATGAGATACTCCAGGTA
CTGGAAGCAAATGCACAACCTGGCCTCCAGGAGGATCAGCTTGAGCCTCCTGCAGGGCAGGAAGCCCCAC
TGCAGGGAGAGCCCCTCTTCAGGCCCTGA

Translation (662 aa):
MLNPGALGVNLVVEELETETKFLIKQVECIDEHHANKALEELMPLLKLQHPNLSLYHEMFIMWNNEISSL
FLCLVMDYYSQGTFQNIMENKRKLKAVVDTEWMHTMLSQVLDAIEYLHKLNIVHRNLKPSNIVLVNSGYC
KLQDMSSQALMTHEAKWNVRAEEDPCQKSWMAPEALKFSFSTKSDIWSLGCIILDMATCSFLNDTEAMQL
RKAIRHHPGSLKPILKTMEEKQIPGTDVYYLLLPFMLHINPSDRLAIKDVMQVTFMSNSFKSSSVALNMQ
RQKVPIFITDVLLEGNMANILDVMQNFSSRPEVQLRAINKLLTMPEDQLGLPWPTELLEEVISIIKQHGR
ILDILLSTCSLLLRVLGQALAKDPEAEIPRSSLIISFLMDTLRSHPNSERLVNVVYNVLAIISSQGQISE
ELEEEGLFQLAQENLEHFQEDRDICLSILSLLWSLLVDVVTVDKEPLEQLSGMVTWVLATHPEDVEIAEA
GCAVLWLLSLLGCIKESQFEQVVVLLLRSIQLCPGRVLLVNNAFRGLASLAKVSELVAFRIVVLEEGSSG
LHLIQDIYKLYKDDPEVVENLCMLLAHLTSYKEILPEMESGGIKDLVQVIRGRFTSSLELISYADEILQV
LEANAQPGLQEDQLEPPAGQEAPLQGEPLFRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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