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Report for CCDS26878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26878.1 Public Mus musculus 14 Duxbl1 23 108 98 CCDS HistoryNCBI Gene:278672Re-query CCDS DB by CCDS ID:26878.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049793.8 ENSMUSP00000056056.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049793.8Link to Ensembl Protein Viewer:ENSMUSP00000056056.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049793Re-query CCDS DB by Protein ID:ENSMUSP00000056056
Original member Current member NCBI NM_183389.2 NP_899245.1 Accepted alive Link to Nucleotide Sequence:NM_183389.2Link to Protein Sequence:NP_899245.1Re-query CCDS DB by Nucleotide ID:NM_183389Re-query CCDS DB by Protein ID:NP_899245Link to BLAST:NP_899245.1

Chromosomal Locations for CCDS 26878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 25983524 25983545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25984146 25984300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25986765 25986858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25987468 25987613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25988759 25989394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGAGCTGAGCTGCAGTACTGGCCTACTGGAAAAAGAAGCCCGGAGAAGGAGAATCATTCTAACCCAGA
GTCAAAAGGACACTCTTCGTGTGTGGTTTGAAAAGAATCCCAATCCTGATCTAGCTACCAGAGGACATCT
GGCTAAGGAACTCGGCATCTCTGAGTCTCAAATTATGACTTGGTTTCAAAAGCATAGAAAAATACGGAAG
CAAGCAGAGTTTGCATGCTGTTCTGAAGAAAGCCAAGAGCAGGAGCAGGATAAACCTAGAGTTAAAGAAG
CTAGAAGGAGCAGAACGCACTTCACAAAGTTCCAGACTGATATTCTAATTGAAGCTTTTGAGAAGAATCG
GTTCCCTGGGATTGTTACCAGGGAAAAACTGGCTCAACAAACAGGCATCCCAGAATCCAGGATTCATATA
TGGTTTCAGAACCGGAGAGCACGGCACCCAGACCCAGGACAGAACACTCAGAAAACTCCTCATCCACCCC
AGAGCAGTCAGGGCCCTACCCAGAAAACTGTGGGTAAACTCGCTCCTTCCAAAACTCTCACCAGCAGCGC
TTCAGTTATACTGCCTCTTTCTCCACCCCACACTCCAAATGGGCCTTTGGATCTCTCTAAGGGCCGTCAG
AAGCAGTTACCAGGGACCACACTACTTCAGTCCTCCCAGGTTGTACAGCAAAGGAGTGATGATCAAAATC
CCAATAAAGGTCACTTATCACCGACAACAACTCCAGGAGAGCAGGGCTTCCATTCTCAGCCTCCTTTACA
GCTCCTAACCCAAAACAGAGGGCATAATCCCAGAGAGAGCGGTGGTTTGGCGGTACCGCGCTTAGAAGAT
TGTACTCAGGTCCCAGCTGTCAATCAACACTTCCGGAAACTAGACCAAAATGATTCCTCCTTTCTCCAAC
ACTGGGACGAGTGGTTCGGATCCATGCTTGCTGAATGGATGCCTGACAAAGAATACTGGTCTGAGAAAGC
TGAGCTGCATCCGTGGCAGGTGCAGCTGCGGCAGCTTGCCAGCGTGTCTCCTCAAGCACACCAAACTCCG
TAG

Translation (350 aa):
MELSCSTGLLEKEARRRRIILTQSQKDTLRVWFEKNPNPDLATRGHLAKELGISESQIMTWFQKHRKIRK
QAEFACCSEESQEQEQDKPRVKEARRSRTHFTKFQTDILIEAFEKNRFPGIVTREKLAQQTGIPESRIHI
WFQNRRARHPDPGQNTQKTPHPPQSSQGPTQKTVGKLAPSKTLTSSASVILPLSPPHTPNGPLDLSKGRQ
KQLPGTTLLQSSQVVQQRSDDQNPNKGHLSPTTTPGEQGFHSQPPLQLLTQNRGHNPRESGGLAVPRLED
CTQVPAVNQHFRKLDQNDSSFLQHWDEWFGSMLAEWMPDKEYWSEKAELHPWQVQLRQLASVSPQAHQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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