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Report for CCDS29602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29602.1 Public Mus musculus 19 Ms4a4d 23 108 98 CCDS HistoryNCBI Gene:66607Re-query CCDS DB by CCDS ID:29602.1Re-query CCDS DB by GeneID:66607See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025581.6 ENSMUSP00000025581.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025581.6Link to Ensembl Protein Viewer:ENSMUSP00000025581.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025581Re-query CCDS DB by Protein ID:ENSMUSP00000025581
Original member Current member NCBI NM_025658.5 NP_079934.2 Accepted alive Link to Nucleotide Sequence:NM_025658.5Link to Protein Sequence:NP_079934.2Re-query CCDS DB by Nucleotide ID:NM_025658Re-query CCDS DB by Protein ID:NP_079934Link to BLAST:NP_079934.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079934.2 225 Q99N05 225 100% 0 0

Chromosomal Locations for CCDS 29602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11548504 11548638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11550266 11550385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11552832 11552888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11554804 11554926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11556192 11556293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11557877 11558017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGCAAGGACTGGCACAGACCACCATGGCAGTGGTTCCTGGAGGTGCTCCACCTTCAGAGAATTCTGTTA
TAAAATCACAAATGTGGAACAAGAACAAAGAGAAATTCTTGAAGGGGGAACCCAAAGTCCTCGGGGCTAT
ACAAGTTATGATTGCTTTCATAAACTTCAGCTTAGGAATAATAATTATATTAAATAGAGTTTCTGAACGA
TTCATGTCAGTGCTCTTACTGGCCCCATTTTGGGGATCAATAATGTTCATTTTCTCAGGATCCCTGTCAA
TTGCAGCAGGAGTGAAACCTACAAAAGCCATGATCATCAGCAGTCTAAGTGTGAACACTATCAGTTCTGT
GTTGGCTGTGGCAGCAAGCATTATTGGCGTCATCAGTGTGATTTCTGGTGTTTTTCGCCAATTTAGAAGT
CAACCAGCCATCGCTAGTTTGGATGTTTTGATGACAATTTTGAATATGCTAGAATTCTGCATTGCTGTGT
CCGTCTCTGCATTTGGGTGTAAAGCTTCCTGTTGTAACTCCAGTGAGGTTCTTGTAGTGCTACCATCAAA
TTCTGCTGTGACAGTGACAGCACCCCCCATGATACTTCAACCATTGCCACCATCAGAATGCCAAGGGAAA
AATGTTCCAGAAAATCTATACAGGAACCAACCAGGAGAAATAGTCTAA

Translation (225 aa):
MQGLAQTTMAVVPGGAPPSENSVIKSQMWNKNKEKFLKGEPKVLGAIQVMIAFINFSLGIIIILNRVSER
FMSVLLLAPFWGSIMFIFSGSLSIAAGVKPTKAMIISSLSVNTISSVLAVAASIIGVISVISGVFRQFRS
QPAIASLDVLMTILNMLEFCIAVSVSAFGCKASCCNSSEVLVVLPSNSAVTVTAPPMILQPLPPSECQGK
NVPENLYRNQPGEIV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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