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Report for CCDS50784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50784.1 Public Mus musculus 2 Vstm2l 23 108 98 CCDS HistoryNCBI Gene:277432Re-query CCDS DB by CCDS ID:50784.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109523.1 ENSMUSP00000105149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109523.1Link to Ensembl Protein Viewer:ENSMUSP00000105149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109523Re-query CCDS DB by Protein ID:ENSMUSP00000105149
Original member Current member NCBI NM_198627.2 NP_941029.2 Accepted alive Link to Nucleotide Sequence:NM_198627.2Link to Protein Sequence:NP_941029.2Re-query CCDS DB by Nucleotide ID:NM_198627Re-query CCDS DB by Protein ID:NP_941029Link to BLAST:NP_941029.2

Chromosomal Locations for CCDS 50784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157914811 157914931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157935325 157935494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157937191 157937241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157943857 157944123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGGGGCCCCGCTGGCCGCGGCGCTGGGCGCCCTCCACTACCTGGCACTTTTCCTGCAACTCGGCGGCG
CCACGCGACCCGCAGGCCATGCGCCCTGGGACAACCACGTCTCCGGACACGCACTCTTCACAGAGACACC
CCATGACATGACGGCACGGACAGGCGAGGATGTAGAGATGGCCTGCTCCTTCCGAGGCAGTGGTTCCCCA
TCATACTCACTGGAGATTCAGTGGTGGTACCTGCGCAGCCACCGGGACTGGACTGACAAGCAGACGTGGG
CCTCCAACCAGCTCAAAGCTTCCCAGCAGGAGGACTCGGGGAAGGACGCCACCAAAATAAGTGTGGTCAA
GGTGGTGGGCAGCAACATCTCCCACAAGCTTCGGCTGTCCCGGGTGAAGCCCACGGACGAAGGCACCTAC
GAGTGCCGCGTGATCGACTTCAGCGACGGCAAGGCCCGGCATCACAAGGTCAAAGCATACCTGCGGGTGC
AGCCCGGGGAGAACTCGGTGCTGCAGCTGCCTGATGCGCCCCCCGCCGCGCCGGCGCCGCCGCCCAAGCC
GGGCCGGGAGCTGCGCAAGCGCTCTCTGCCCGAGGCCTGCAGCCTGTAG

Translation (202 aa):
MGAPLAAALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRGSGSP
SYSLEIQWWYLRSHRDWTDKQTWASNQLKASQQEDSGKDATKISVVKVVGSNISHKLRLSRVKPTDEGTY
ECRVIDFSDGKARHHKVKAYLRVQPGENSVLQLPDAPPAAPAPPPKPGRELRKRSLPEACSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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