NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26220.1 Public Mus musculus 13 Akr1c13 23 108 98 CCDS HistoryNCBI Gene:27384Re-query CCDS DB by CCDS ID:26220.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021634.3 ENSMUSP00000021634.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021634.3Link to Ensembl Protein Viewer:ENSMUSP00000021634.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000021634Re-query CCDS DB by Protein ID:ENSMUSP00000021634
Original member NCBI NM_013778.2 NP_038806.2 Updated not alive Link to Nucleotide Sequence:NM_013778.2Link to Protein Sequence:NP_038806.2Re-query CCDS DB by Nucleotide ID:NM_013778Re-query CCDS DB by Protein ID:NP_038806
Current member NCBI NM_013778.3 NP_038806.2 Accepted alive Link to Nucleotide Sequence:NM_013778.3Link to Protein Sequence:NP_038806.2Re-query CCDS DB by Nucleotide ID:NM_013778Re-query CCDS DB by Protein ID:NP_038806Link to BLAST:NP_038806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038806.2 323 Q8VC28 323 100% 0 0

Chromosomal Locations for CCDS 26220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 4191227 4191310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4194034 4194201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4194677 4194793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4196433 4196510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4196989 4197111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4197801 4197910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4198478 4198643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4203367 4203449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4205341 4205383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAGCTCCAAACAGCACTGTGTCAAACTAAATGATGGCCACTTAATTCCTGCCCTGGGCTTTGGCACCT
ATAAACCCAAGGAGGTTCCCAAGAGTAAGTCACTGGAGGCTGCATGCCTAGCTCTAGATGTTGGGTACCG
CCATGTTGATACTGCTTATGCATACCAAGTAGAAGAGGAGATAGGACAGGCCATTCAAAGCAAGATTAAA
GCTGGGGTTGTAAAGAGAGAAGACCTGTTCATCACTACAAAGCTTTGGTGCACTTGCTTTCGACCAGAGC
TGGTCAAGCCTGCCTTGGAAAAGTCACTGAAAAAGCTTCAGCTGGATTATGTTGATCTTTACATTATGCA
TTACCCAGTGCCAATGAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTTGGAC
ACTGTGGATTTCTGTGACACATGGGAGAGGTTGGAGGAGTGTAAGGATGCAGGATTGGTCAAGTCCATTG
GGGTGTCCAACTTTAACCACAGGCAGCTGGAGCGAATCCTCAATAAGCCAGGACTGAAGTACAAACCTGT
CTGCAACCAGGTTGAATGTCATCTCTATTTGAACCAGCGTAAGCTACTGGATTACTGCGAATCAAAAGAC
ATTGTTCTCGTTGCTTACGGTGCTCTGGGGACCCAGCGATATAAAGAATGGGTGGACCAGAACTCCCCAG
TTCTCTTGAATGATCCAGTTCTTTGTGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACT
TCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGATGAGAGAGAAT
TTGCAGGTTTTTGGATTTCAGTTGTCCCCTGAGGACATGAAAACACTAGATGGCCTGAACAAAAACTTTC
GATACCTTCCAGCAGAGTTCCTTGTTGACCACCCAGAGTATCCATTTGTGGAGGAATATTAA

Translation (323 aa):
MSSKQHCVKLNDGHLIPALGFGTYKPKEVPKSKSLEAACLALDVGYRHVDTAYAYQVEEEIGQAIQSKIK
AGVVKREDLFITTKLWCTCFRPELVKPALEKSLKKLQLDYVDLYIMHYPVPMKSGDNDFPVNEQGKSLLD
TVDFCDTWERLEECKDAGLVKSIGVSNFNHRQLERILNKPGLKYKPVCNQVECHLYLNQRKLLDYCESKD
IVLVAYGALGTQRYKEWVDQNSPVLLNDPVLCDVAKKNKRSPALIALRYLIQRGIVPLAQSFKENEMREN
LQVFGFQLSPEDMKTLDGLNKNFRYLPAEFLVDHPEYPFVEEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH