NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40496.1 Public Mus musculus 8 Gins2 23 108 98 CCDS HistoryNCBI Gene:272551Re-query CCDS DB by CCDS ID:40496.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034278.5 ENSMUSP00000034278.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034278.5Link to Ensembl Protein Viewer:ENSMUSP00000034278.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034278Re-query CCDS DB by Protein ID:ENSMUSP00000034278
Original member Current member NCBI NM_178856.1 NP_849187.1 Accepted alive Link to Nucleotide Sequence:NM_178856.1Link to Protein Sequence:NP_849187.1Re-query CCDS DB by Nucleotide ID:NM_178856Re-query CCDS DB by Protein ID:NP_849187Link to BLAST:NP_849187.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849187.1 185 Q9D600 185 100% 0 0

Chromosomal Locations for CCDS 40496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120581686 120581811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120582082 120582208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120586093 120586192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120588725 120588839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120588926 120589015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGATGCGGCCGAGGTGGAGTTTTTGGCCGAAAAGGAGTTGGTGACTATCATCCCGAACTTCAGTCTGG
ACAAGATCTACCTGATCGGGGGGGACCTGGGGCCCTTCAACCCCGGCTTACCCGTGGACGTGCCCCTGTG
GCTGGCCATTAACCTGAAACAGAGACAGAAGTGCCGCCTGTTACCTCCGGAATGGATGGATGTGGAGAAA
CTGGAACAGATGCGTGATGAGGAGCGGAAGGAGGAGACATTCACCCCAGTGCCCAGCCCGCACTACATGG
AGATCACGAAGCTCCTGCTGAATCATGCTTCTGACAACATCCCCAAAGCAGACACCATCCGGACACTGAT
CAAAGACCTGTGGGACACACGCATGGCCAAGCTTCGAGTGTCTGCTGACAGTTTTGTGCGGCAGCAAGAG
GCACATGCCAAGCTGGACAACCTGACCTTGATGGAGATCAGCAGCAGCGGGGCCTTCCTCACCCAGGCCC
TCAACCACATGTACAAGCTCCGCACAAACCTCCAGCCCTCCGAGAGCACCCAGTCGCAGGACTTCTAG

Translation (185 aa):
MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPEWMDVEK
LEQMRDEERKEETFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKDLWDTRMAKLRVSADSFVRQQE
AHAKLDNLTLMEISSSGAFLTQALNHMYKLRTNLQPSESTQSQDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH