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Report for CCDS40027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40027.1 Public Mus musculus 7 B3gnt6 23 108 98 CCDS HistoryNCBI Gene:272411Re-query CCDS DB by CCDS ID:40027.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098278.3 ENSMUSP00000095879.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098278.3Link to Ensembl Protein Viewer:ENSMUSP00000095879.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098278Re-query CCDS DB by Protein ID:ENSMUSP00000095879
Original member Current member NCBI NM_001081167.1 NP_001074636.1 Accepted alive Link to Nucleotide Sequence:NM_001081167.1Link to Protein Sequence:NP_001074636.1Re-query CCDS DB by Nucleotide ID:NM_001081167Re-query CCDS DB by Protein ID:NP_001074636Link to BLAST:NP_001074636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074636.1 391 Q3USF0 391 100% 0 0

Chromosomal Locations for CCDS 40027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 98193576 98194751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCTTTGCCCAGCAGCCGCAGGTTCAAGAGTCCCACGACACTGGCTTTCTTTCTAGTGGGTGTGACTT
TAGTGGTGCTGAATCAGTGGTTCCTCCAGGAACACAGGCAGGAGAAAGCCAAGGGTCCTGTGGCCACTCG
CCGGTCTTTGGCAGCTGTGGTACAGCGTTCGCCGCTCTTCCAGGTGCCCCCCTGCGTGGCCAACGCCTCC
GCGAACCTCCTGACTGGCTTCCAGCTGCTGCCTGCTAGGATCCAAGACTTCCTGCGCTACCGCCACTGCC
GCCGCTTTCCGCAACTGTGGGACGCGCCGCCCAAGTGCGCGGGCCCCCGCGGCGTCTTCTTGCTGCTGGC
CGTGAAGTCGTCGCCTGCGCACTACGAGCGGCGCGAGCTGATCCGGCGCACGTGGGGCCAGGAGCGCAGC
TACAGCGGCCGGCAGGTGCTTCGCCTCTTCCTGGTGGGGACCTCCCCTCCCGAGGAGGCGGCTCGCGAGC
CTCAGCTGGCCGATCTGCTGAGCCTGGAGGCGCGCGAGTACGGCGATGTGCTGCAGTGGGACTTCAGTGA
CACCTTCCTCAACCTCACACTCAAGCACCTGCACCTGCTGGACTGGACAGCGGAGCACTGCCCGGGCGTG
AGCTTCCTGCTCAGCTGCGACGACGACGTCTTCGTGCACACGGCCAACGTACTGAGCTTCCTAGAGGTGC
AGTCGCCCGAGCACCACCTCTTCACCGGGCAGCTCATGGTTGGTTCTGTGCCTGTTCGCGAAAGCGGGAG
CAAGTACTTCGTGCCCCCACAGATCTTCCCGGGCGTAGCCTACCCTGCGTACTGCAGCGGCGGCGGCTTC
CTTCTGTCCCGCTACACAGTCCGCAACCTGCGCAGCGCGGCACACCACGTCCCGCTCTTCCCCATCGACG
ATGCCTACATGGGCATGTGTCTGCAGCAGGCCGGCCTGGCGCCCAGCAGCCACCAGGGCATCCGGCCCTT
CGGCGTGCAGCTGCCCAATGTGCAGCGCTTATCCTTGGATCCCTGCATGTACCGCGAGCTGCTGCTGGTG
CACCGCTTCGCGCCTTATGAGATGCTGCTCATGTGGAAGGCGCTGCACAACCCAGCGCTGCACTGTAGCC
ACAAACAGGTTGCAGGATCTCCCACGGCCGGAGAACAGAACCCCGATGCACACTGA

Translation (391 aa):
MALPSSRRFKSPTTLAFFLVGVTLVVLNQWFLQEHRQEKAKGPVATRRSLAAVVQRSPLFQVPPCVANAS
ANLLTGFQLLPARIQDFLRYRHCRRFPQLWDAPPKCAGPRGVFLLLAVKSSPAHYERRELIRRTWGQERS
YSGRQVLRLFLVGTSPPEEAAREPQLADLLSLEAREYGDVLQWDFSDTFLNLTLKHLHLLDWTAEHCPGV
SFLLSCDDDVFVHTANVLSFLEVQSPEHHLFTGQLMVGSVPVRESGSKYFVPPQIFPGVAYPAYCSGGGF
LLSRYTVRNLRSAAHHVPLFPIDDAYMGMCLQQAGLAPSSHQGIRPFGVQLPNVQRLSLDPCMYRELLLV
HRFAPYEMLLMWKALHNPALHCSHKQVAGSPTAGEQNPDAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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