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Report for CCDS48273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48273.1 Public Mus musculus 1 Cdk15 23 108 98 CCDS HistoryNCBI Gene:271697Re-query CCDS DB by CCDS ID:48273.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114248.2 ENSMUSP00000109886.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114248.2Link to Ensembl Protein Viewer:ENSMUSP00000109886.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114248Re-query CCDS DB by Protein ID:ENSMUSP00000109886
Original member NCBI NM_001033373.3 NP_001028545.2 Updated not alive Link to Nucleotide Sequence:NM_001033373.3Link to Protein Sequence:NP_001028545.2Re-query CCDS DB by Nucleotide ID:NM_001033373Re-query CCDS DB by Protein ID:NP_001028545
Current member NCBI NM_001033373.4 NP_001028545.2 Accepted alive Link to Nucleotide Sequence:NM_001033373.4Link to Protein Sequence:NP_001028545.2Re-query CCDS DB by Nucleotide ID:NM_001033373Re-query CCDS DB by Protein ID:NP_001028545Link to BLAST:NP_001028545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028545.2 433 Q3V3A1-1 433 100% 0 0

Chromosomal Locations for CCDS 48273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59256973 59257098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59257816 59257956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59258703 59258797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59265604 59265683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59280569 59280663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59281409 59281471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59287762 59287885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59289659 59289779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59301195 59301288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59310796 59310859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59326671 59326719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59330859 59330998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59344248 59344357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1302 nt):
ATGGGTCAAGAGCTGTGTGCAAAGAGGCTACAGCCAGGATGCAGTTGCTACCACCGTTCGGAGGGAGGGG
AGGCGCACAGCTGTCAGAGAAGCCAGCCTGGAAGCACCGAGCCTGCTGTATTCGAGCTAACAGAAGCATC
CAGTTCCACGGCTTCATTTCACCCCAGGGGACTGGAGGCTGCCAGTGCCCAGAAGTTGAAGAGTAAAAGG
CCCCGGAGTAACAGTGATTCTTTTCAGGAAGAGAATCTGAGGCAGGGGTTGCCATGGAAGAAGAGCCTCC
CTTTTGGGGCAGCCTCATCTTACTTGAACTTGGAGAAGCTGGGTGAAGGTTCTTATGCCAAAGTTTACAA
GGGCATCAGCAGGATAAATGGACAACTAGTAGCTCTCAAGGTCATCAGCATGAATGCAGAGGAGGGAGTC
CCTTTCACAGCCATCCGGGAAGCATCTCTCCTGAAGGGCTTGAAGCATGCCAATATTGTCCTCTTGCATG
ACATTGTTCACACCAAAGAGACTCTGACATTCGTATTTGAATACATGCATACCGACCTGGCCCAGTACAT
GTCTCAGCATCCTGGAGGGCTTCATCCTCACAATGTCAGGCTTTTCATGTTTCAACTTCTGCGGGGCCTG
GCATACATCCACCACCAGCGTGTTCTCCACAGGGACCTGAAACCTCAGAACTTGCTCCTCAGTCACCTGG
GAGAGCTCAAACTGGCTGATTTTGGTCTTGCTCGAGCCAAGTCCATTCCTAGCCAGACATACTCCTCAGA
AGTGGTGACACTCTGGTACCGGCCACCTGACGCTTTGCTGGGAGCCACTGAGTACTCCTCTGAGCTAGAC
ATATGGGGCGCAGGCTGCATCTTCATTGAAATGTTCCAGGGTCAACCTCTGTTTCCTGGGGTATCCAACA
TCCTCGAACAGCTGGAGAAGATCTGGGAGGTTCTGGGAGTCCCTACAGAGGATACCTGGCCTGGAGTCTC
CAAACTGCCTAACTACAATCCAGAATGGTTCCCGCCACCTAAACCTCAAAGCCTGCAGATTGTCTGGGAC
AGGCTGGGTGGAGTTCCTGAAGCTGAAGACCTGGCCTCCCAGATGCTAAAAGGCTTCCCCAGGGACCGTG
TCTCAGCCCAAGAAGCGCTCGTTCATGATTATTTCAGTGTCTTGCCATCCCAGTTGTACCAGCTTCCTGA
TGAGGAGTCTCTGTTTGCAGTTTCGGGAGTGAAGCTAAAGCCAGAAATGTGTGACCTTTCGGCTTCCTAC
AGGAAGAGACACCACCTAGTCGGGGTTAACAAATGTTGGTGA

Translation (433 aa):
MGQELCAKRLQPGCSCYHRSEGGEAHSCQRSQPGSTEPAVFELTEASSSTASFHPRGLEAASAQKLKSKR
PRSNSDSFQEENLRQGLPWKKSLPFGAASSYLNLEKLGEGSYAKVYKGISRINGQLVALKVISMNAEEGV
PFTAIREASLLKGLKHANIVLLHDIVHTKETLTFVFEYMHTDLAQYMSQHPGGLHPHNVRLFMFQLLRGL
AYIHHQRVLHRDLKPQNLLLSHLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDALLGATEYSSELD
IWGAGCIFIEMFQGQPLFPGVSNILEQLEKIWEVLGVPTEDTWPGVSKLPNYNPEWFPPPKPQSLQIVWD
RLGGVPEAEDLASQMLKGFPRDRVSAQEALVHDYFSVLPSQLYQLPDEESLFAVSGVKLKPEMCDLSASY
RKRHHLVGVNKCW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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