NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88501.1 Public Mus musculus 13 Ankdd1b 23 108 98 CCDS HistoryNCBI Gene:271144Re-query CCDS DB by CCDS ID:88501.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055607.12 ENSMUSP00000061643.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055607.12Link to Ensembl Protein Viewer:ENSMUSP00000061643.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055607Re-query CCDS DB by Protein ID:ENSMUSP00000061643
Original member Current member NCBI NM_001369169.1 NP_001356098.1 Accepted alive Link to Nucleotide Sequence:NM_001369169.1Link to Protein Sequence:NP_001356098.1Re-query CCDS DB by Nucleotide ID:NM_001369169Re-query CCDS DB by Protein ID:NP_001356098Link to BLAST:NP_001356098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356098.1 554 Q14DN9-2 554 100% 0 0

Chromosomal Locations for CCDS 88501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96417839 96417900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96419665 96419796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96420720 96420921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96424733 96424828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96429786 96429884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96433302 96433400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96435873 96435971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96441557 96441655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96444279 96444377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96445789 96445887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96454572 96454676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96454783 96454881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96460815 96460913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96465294 96465397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96470940 96471111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGAACCCTGAGAGTGCCCAGGGCCACGGAGCGAGGGCTCCGATGCTCCAGGCAGCCAGGGGCCTAAAGG
CCAACCTGAGGGATGTAGCCACCAGACCCTGGAGGAGCCTGGCCAGGATGCCGAAGCCGGAGGTGCAGGA
CCCGGAGACAGCAGCTGCAGGACATGAGGGCTTGCTGGCAATCGAGAGGAGCTTTCAGAATGCTGCTAAA
AGCAGTAATTTGGATCTTATGGAGAAGCTGTTTGAAAAGAAGGTGAACATTAATGCTGTGAACAATATGA
ACCGCACAGCCCTGCACTTTGCCGTGGGGAGGAATAGTTTATCTGCAGTGGATTTCTTACTGAGTCACAA
AGCCAGGGTGGATGTTGCTGACAAGCATGGTTTGACAGTCATTCACCTGGCAGCCTGGTCTGGAAGCTTC
GAGATCATGCTCATGCTAGTTAAAGCTGGAGCAGACCAGAGAGCCAAGAACCAGGAAGGAATGAACGCTC
TCCACTTGGCAGCTCAGAACAACAACCTGCACATTGTGGACTACCTCATTCACGACTTGCACCTGCACGA
CCTGAACCAGCCCAATGAGAGAGGAAGAAAACCATTTCATTTGGCAGCTGAGAGGGGCCACGTTGAAATG
ATTGAAAAGCTTATCTTCCTTAATCTCCATACCTCAGAAAAAGACAAGGATGGGAACACGGCCTTGCACC
TGGCTGCAATGCACGGTCACAGCCCAGCCGTGCAAGTGCTACTAACTCAGTGGTCAGAAGTCAATGAGAG
CAATGAGAATGGAGAAACCCCATTCCTGTTGGCTGTTGTGGGAGGTCATGAAGAATGCAGTCGCGTGCTC
CTGGCAGGAGGAAGTGATGTCAACATTCCAAACAAACTCAATGTCAGTGCCTTGCAGACAGCGACCCGGA
ACGGCCACACAGCCCTTGTCAACTTTCTTCTCGGTGAGAATGCTGATTTGCAGCAGCAGAAGGAATCTAA
GGAGCCCCCTCTTCACCTAGCAGTTATCAACAACCGCCCCGCAGTCGTGAACAGCTTACTAAGTGCTCGG
CATGATGTTGATGTCTTAGATCAGAGGCGGCAGACCCCTCTGCACGTAGCTGCTGATCTTGGAAATGTGG
AGCTGGTGGAGACACTGCTGAAGGCTGGCTGCAACCTGAAAATCACTGACAAGCAAGGAAAGACTGCCCT
GGCGGTGGCTGCCAGGAGCCAGCACAGCCTCGTCGTGGATATGCTGATCAAAGCTGAGAGGTACTACGCC
TGGAGAGAGGAGCACCGTGAGAGCATCCAGGACTCAGCAGTGAGCTCTACACTGACGTTCAAGCAGGACC
ATAGTCTGGAGACCAGGCAAATCCGCACACTGCTCTGGAACCTGGCCTATCGGCAGCTGAAAAAGAAAGA
CTGGCAGAGGCTGGCCCGCTTGTGGAGTTTTACAGAGGACCAGATCAGAGCCATTGAGGAACAGTGGTCA
GGTAATGACAGCTTCCATGAGCATGGCTACAGGGCTCTGCTCATCTGGCTGCACGGGGCTCTGCTGACAC
AGCTGGACCCTGCCAAGCAGTTGTATGAGGAGCTGTTGTGTGCAGGATTCCCAGAACTAGCTGAAAAGAT
TCGGCAGTTCAAAAGCAAAACTGACTCAAGCTCCAAGAAATGTGCAGTCTCCTAA

Translation (554 aa):
MNPESAQGHGARAPMLQAARGLKANLRDVATRPWRSLARMPKPEVQDPETAAAGHEGLLAIERSFQNAAK
SSNLDLMEKLFEKKVNINAVNNMNRTALHFAVGRNSLSAVDFLLSHKARVDVADKHGLTVIHLAAWSGSF
EIMLMLVKAGADQRAKNQEGMNALHLAAQNNNLHIVDYLIHDLHLHDLNQPNERGRKPFHLAAERGHVEM
IEKLIFLNLHTSEKDKDGNTALHLAAMHGHSPAVQVLLTQWSEVNESNENGETPFLLAVVGGHEECSRVL
LAGGSDVNIPNKLNVSALQTATRNGHTALVNFLLGENADLQQQKESKEPPLHLAVINNRPAVVNSLLSAR
HDVDVLDQRRQTPLHVAADLGNVELVETLLKAGCNLKITDKQGKTALAVAARSQHSLVVDMLIKAERYYA
WREEHRESIQDSAVSSTLTFKQDHSLETRQIRTLLWNLAYRQLKKKDWQRLARLWSFTEDQIRAIEEQWS
GNDSFHEHGYRALLIWLHGALLTQLDPAKQLYEELLCAGFPELAEKIRQFKSKTDSSSKKCAVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH