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Report for CCDS53236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53236.1 Public Mus musculus X Map3k15 23 108 98 CCDS HistoryNCBI Gene:270672Re-query CCDS DB by CCDS ID:53236.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 53236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033665.8 ENSMUSP00000033665.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033665.8Link to Ensembl Protein Viewer:ENSMUSP00000033665.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033665Re-query CCDS DB by Protein ID:ENSMUSP00000033665
Original member NCBI NM_001163085.3 NP_001156557.2 Updated not alive Link to Nucleotide Sequence:NM_001163085.3Link to Protein Sequence:NP_001156557.2Re-query CCDS DB by Nucleotide ID:NM_001163085Re-query CCDS DB by Protein ID:NP_001156557
Current member NCBI NM_001163085.4 NP_001156557.2 Accepted alive Link to Nucleotide Sequence:NM_001163085.4Link to Protein Sequence:NP_001156557.2Re-query CCDS DB by Nucleotide ID:NM_001163085Re-query CCDS DB by Protein ID:NP_001156557Link to BLAST:NP_001156557.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156557.2 1331 A2AQW0 1331 100% 0 0

Chromosomal Locations for CCDS 53236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 159988433 159988805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160001905 160002044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160004163 160004186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160040990 160041183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160044061 160044229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160046617 160046723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160072838 160073008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160075595 160075707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160076129 160076288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160079914 160080064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160081785 160081892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160083864 160083913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160086318 160086413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160089804 160089891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160091581 160091714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160094296 160094423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160097977 160098107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160098321 160098426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160112406 160112563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160115059 160115242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160115885 160116050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160116519 160116693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160117655 160117840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160118541 160118646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160119510 160119723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160121646 160121758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160122362 160122462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160122534 160122610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 160122927 160122999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3996 nt):
ATGGAGGGCGGCGGCGGCAGCGGCGGCGGCGGCGGGCCAGTCCCTGCCGAGGCTCCGGAGGAAGCCGGCG
AGCCGCCCCAGGGCAGGCTGCCCCCGGGGCCCGAGGGCGCGGCGGGGCTGGCGGAGCCCGAGAGCACGGG
GGACGCGGCGGGCGGCGAGGCCGAGGGCGGGCGCGGGCCACGCCGGGCTCTGCGGGCTGTCTACGTGCGC
AGCGAAAGTTCGCAGGGGGCAGCCGCCGGCGGCGGCCCCGAGGCCGGGGCGCTCAAGTGCCTGCTTCGGG
CTTGCGAAGCCGAGGGCGCCCACCTCACCTCCGTCCCCTTCGGGGAGCTCGACTTCGGGGAGACGGCCGT
GCTCGATGCCTTCTACGATGCAGATGTTGCCATTGTGGACATGAGTGATATCTCCAGACAGCCTTCCCTT
TTCTACCATCTTGGAGTCCGAGAGAGTTTTGACATGGCTAACAATGTAATTCTCTACTATGATACTGATG
CTGACACTGCTCTGTCATTGAAGGATATGGTCACTCAAAAAAACACAGCATCCAGTGGAAATTATTATTT
TATCCCCTACACTGTGACACCATGTGCTGACTATTTTTGCTGTGAGAGTGATGCCCAAAGGAGAGCCTCA
GAGTACATGCAGCCTAACTGGGACACCATACTGGGCCCGCTGTGTATGCCCCTGGTCGACAGGTTCACTA
GCCTCCTTAAGGACATCCGTGTGACTTCATGTGCTTATTATAAAGAAACATTGTTAAATGACATCCGGAA
AGCCAGAGAGAAATACCAAGGTGATGAACTGGCGAAAGAGTTGACTCGGATCAAATTCCGTATGGATAAC
ATTGAGGTTCTGACATCGGACATCATCATTAACTTACTTCTGTCCTACCGTGATATCCAGGACTACGATG
CAATGGTCAAGCTGGTAGAGACACTGAAGATGCTGCCAACGTGTGATTTGGCTGATCAGCACAACATTAA
ATTTCACTATGCATTTGCACTGAATAGGAGAAACAGCACAGGTGACCGTGAAAAGGCTCTTCAGGTTATG
CTCCAAGTTCTGCAAAGCTGTGACCACCCAGCTCCTGACATGTTTTGCCTGTGTGGGCGGATATACAAGG
ACATCTTCCTGGATTCAGGTTGTGAAGAGGATGCAAGCAGAGACAGTGCCATTGAGTGGTATCGCAAAGG
GTTTGAACTCCAGTCATCCCTTTATTCAGGAATTAACCTTGCAGTTTTGCTGATAGTTTCTGGACAACAG
TTTGAAACTTCGATGGAACTAAGGAAAATAGGTGTCCGGCTGAACAGTTTATTGGGAAGAAAAGGGAGCC
TGGAGAAAATGAACAATTACTGGGATGTAGGTCAGTTCTTCACCGTCAGCATGCTGGCAAGTGATATTGG
GAAAGCTGTCCAGGCAGCAGAGAGGTTGTTCAAACTGAAACCCCCAGTCTGGTACCTGCGGTCATTAGTT
CAGAACTTGCTGTTAATTCAACGCTTCAAGAAACCCATTACAGAACATTCACCCAGGCAGGAACGGCTTA
ACTTCTGGTTAGATATCATTTTTGAAGCAACGAATGAAGTTACTAATGGACTCAGATTTCCAGTTCTGGT
AATAGAGCCAACCAAAGTCTACCAGCCTTCTTATGTTTCTATCAACAATGAAGCTGAAGAAAGAACTGTT
TCTTTATGGCATGTCTCACCCACAGAAATGAAACAAATCCATGAGTGGAATTTTACAGCCTCTTCTATTA
AAGGAATAAGCCTATCCAAGTTTGATGAACGGTGCTGTTTTCTTTATGTCCATGATAATTCTGATGACTT
TCAAATCTACTTTTCCACCGAAGACCAGTGTAATAGATTTTGTTCTTTGGTCAAAGAGATGCTAAACAAT
GGAGTGGGCAGTACAGTGGAGTTGGAGGGAGAGGCTGATGGAGACACCTTAGAGTATGAGTATGACCATG
ATGCGAATGGGGAGAGAGTTGTCTTGGGGAAAGGCTCCTATGGGATTGTGTATGCCGGCCGTGATCTCAG
TAATCAAGTACGGATAGCCATCAAGGAAATCCCAGAGAGAGATATCAGGTACTCTCAGCCTCTGCATGAA
GAAATAGCTCTGCACAAGTATCTCAAACATCGCAACATCGTCCAGTACCTAGGCTCTGTTTCAGAGAATG
GCTACATTAAGATATTTATGGAGCAGGTGCCTGGAGGAAGCCTTTCTGCTCTCTTACGATCTAAATGGGG
ACCTATGAAGGAACCCACTATCAAGTTTTATACCAAACAGATCCTGGAAGGCCTGAAGTATCTCCATGAA
AACCAGATAGTGCACAGAGACATAAAGGGAGATAATGTTCTGGTGAACACCTATAGTGGAGTGGTAAAAA
TCTCTGATTTTGGAACCTCTAAACGCCTCGCAGGAATTAACCCATGCACCGAGACCTTTACAGGAACTCT
GCAGTACATGGCACCTGAGATTATTGATCAAGGACCTCGGGGATATGGTGCTCCAGCTGATATCTGGTCC
TTGGGCTGCACCATCATTGAGATGGCAACCAGCAGGCCTCCATTCCATGAGCTTGGTGAGCCCCAAGCAG
CCATGTTTAAGGTAGGGATGTTTAAGATCCACCCTGAAATTCCAGAGGCCCTTTCAGCTGAAGCCAGAGC
CTTCATCTTGTCTTGTTTTGAGCCTGACCCTCAGAAACGTGTCACTGCTGCTGACCTTCTCCAAGAAGGG
TTCTTAAGGCAGGTGAACAAAGGCAAAAAGAACCGAATTGCTTTCAAGCCTTCAGAGGGTGTTCGGAGTG
GCACTGGTACTCTGGCTCTGCCTTCATCAGGAGAGCTTGTGGGCAGCAGCAGCAGCGAGCATGGCTCAAT
CTCCCCAGACTCGGATGCCCAGCCTGATGCATTCTTTGAGAAAGTCCAGGTGCCCAAACATCAGCTCAGC
CACCTTCTCAGTGTCCCAGATGAAAGCCCAGCCTTAGATGACCGAAGCACAGCCTTACCCCCAGAGGAGA
GGGACCCTGGTCTCTTTCTGCTGCGCAAGGACAGTGAGCGCAGAGCCATCCTTTACAGAATCCTTTGGGA
GGAACAGAACCAAGTGGCTTCCAACTTGCAAGAGTGTGTGGTCCAGAGTTCAGAAGAGTTGCTTCTCTCA
GTTAGCCACATCAAACAGATAATTGGAATCCTGAGGGACTTCATCCGCTCCCCAGAGCACAGGGTGATGG
CAGCCACAATATCAAAACTAAAGGTGGACCTGGACTTTGACAGCTCATCCATCAACCAGATTCACCTGAT
TCTGTTTGGGTTCCAAGATGCTGTCAATAGAATTTTGAGAAACCACTTAATTAGGCCCCACTGGATGTTT
GCAATGGACAACATCATTCGCAGAGCTGTGCAGGCTGCAGTCACCATTCTCATTCCAGAGCTCCAAGCCC
ACTTTGAGCCTGCTTCTGAGACTGAAGGGGTAGACAAGGACACAGAAGTAGAAGGGGACTATCCCCTAGT
AGACCTCCTCAGCCAAGAAGTGCATGTGACACCTAGAGGCACCAGACCTGGCTCAGTGGCTATCCAGGAG
GGCCAGCCCCACCAGCAAGACCCAAGTCTCCAACTGAGCAAGCTCAGGCAAGAGACCAACAGACTTTGGG
AACACCTAGTTCAAAAAGAGAGGGAGTACCAGAATCTTCTTCGCCTAATTCTAGACCAGAAAACTCAAGA
ATTGTATCACCTTCAGTTACAGTACAAATCCAATGGTGGTACAGAGAACCCTCCACCCCCTGATGGACTG
GGAACCGACAGAGAGCTTATAGACTGGTTGCAACTACAAGGAGTGGATGCCAATACAATAGAAAAGATTG
TTGAAGAGGACTATACACTTTCTGATATTCTCAATGATATCACTAAGGAAGACCTAAGGTGCCTCCGACT
ACGGGGTGGTGTCCTCTGTAGGCTCTGGCATGCAGTCTCCCAGCACAGAAGACAAATGCAGGAGTCTTCA
CAGTGA

Translation (1331 aa):
MEGGGGSGGGGGPVPAEAPEEAGEPPQGRLPPGPEGAAGLAEPESTGDAAGGEAEGGRGPRRALRAVYVR
SESSQGAAAGGGPEAGALKCLLRACEAEGAHLTSVPFGELDFGETAVLDAFYDADVAIVDMSDISRQPSL
FYHLGVRESFDMANNVILYYDTDADTALSLKDMVTQKNTASSGNYYFIPYTVTPCADYFCCESDAQRRAS
EYMQPNWDTILGPLCMPLVDRFTSLLKDIRVTSCAYYKETLLNDIRKAREKYQGDELAKELTRIKFRMDN
IEVLTSDIIINLLLSYRDIQDYDAMVKLVETLKMLPTCDLADQHNIKFHYAFALNRRNSTGDREKALQVM
LQVLQSCDHPAPDMFCLCGRIYKDIFLDSGCEEDASRDSAIEWYRKGFELQSSLYSGINLAVLLIVSGQQ
FETSMELRKIGVRLNSLLGRKGSLEKMNNYWDVGQFFTVSMLASDIGKAVQAAERLFKLKPPVWYLRSLV
QNLLLIQRFKKPITEHSPRQERLNFWLDIIFEATNEVTNGLRFPVLVIEPTKVYQPSYVSINNEAEERTV
SLWHVSPTEMKQIHEWNFTASSIKGISLSKFDERCCFLYVHDNSDDFQIYFSTEDQCNRFCSLVKEMLNN
GVGSTVELEGEADGDTLEYEYDHDANGERVVLGKGSYGIVYAGRDLSNQVRIAIKEIPERDIRYSQPLHE
EIALHKYLKHRNIVQYLGSVSENGYIKIFMEQVPGGSLSALLRSKWGPMKEPTIKFYTKQILEGLKYLHE
NQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDQGPRGYGAPADIWS
LGCTIIEMATSRPPFHELGEPQAAMFKVGMFKIHPEIPEALSAEARAFILSCFEPDPQKRVTAADLLQEG
FLRQVNKGKKNRIAFKPSEGVRSGTGTLALPSSGELVGSSSSEHGSISPDSDAQPDAFFEKVQVPKHQLS
HLLSVPDESPALDDRSTALPPEERDPGLFLLRKDSERRAILYRILWEEQNQVASNLQECVVQSSEELLLS
VSHIKQIIGILRDFIRSPEHRVMAATISKLKVDLDFDSSSINQIHLILFGFQDAVNRILRNHLIRPHWMF
AMDNIIRRAVQAAVTILIPELQAHFEPASETEGVDKDTEVEGDYPLVDLLSQEVHVTPRGTRPGSVAIQE
GQPHQQDPSLQLSKLRQETNRLWEHLVQKEREYQNLLRLILDQKTQELYHLQLQYKSNGGTENPPPPDGL
GTDRELIDWLQLQGVDANTIEKIVEEDYTLSDILNDITKEDLRCLRLRGGVLCRLWHAVSQHRRQMQESS
Q


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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