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Report for CCDS40031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40031.1 Public Mus musculus 7 Rps3 23 108 98 CCDS HistoryNCBI Gene:27050Re-query CCDS DB by CCDS ID:40031.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032998.12 ENSMUSP00000032998.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032998.12Link to Ensembl Protein Viewer:ENSMUSP00000032998.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032998Re-query CCDS DB by Protein ID:ENSMUSP00000032998
Original member Current member NCBI NM_012052.2 NP_036182.1 Accepted alive Link to Nucleotide Sequence:NM_012052.2Link to Protein Sequence:NP_036182.1Re-query CCDS DB by Nucleotide ID:NM_012052Re-query CCDS DB by Protein ID:NP_036182Link to BLAST:NP_036182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036182.1 243 P62908 243 100% 0 0

Chromosomal Locations for CCDS 40031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99479277 99479470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99479876 99480063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99481697 99481791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99482261 99482354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99482570 99482700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99483592 99483621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCGGTGCAGATTTCCAAGAAGAGGAAGTTTGTAGCTGATGGCATCTTCAAAGCTGAGCTGAATGAAT
TTCTCACTCGGGAGCTGGCTGAAGATGGCTACTCTGGAGTTGAAGTCCGAGTTACACCAACCAGGACAGA
AATCATTATTTTAGCCACCAGGACACAGAATGTTCTTGGGGAGAAGGGTCGTCGGATCAGAGAGTTGACC
GCAGTTGTCCAGAAGCGCTTTGGCTTCCCTGAAGGCAGCGTAGAGCTTTATGCAGAGAAAGTGGCCACAA
GAGGTCTGTGTGCCATTGCCCAGGCAGAGTCTCTACGCTACAAACTCCTTGGAGGGCTTGCGGTTCGAAG
GGCCTGCTATGGTGTGCTTCGGTTCATTATGGAGAGTGGGGCCAAGGGCTGCGAGGTTGTGGTGTCTGGG
AAGCTCCGAGGACAGAGGGCCAAGTCCATGAAGTTTGTGGATGGTCTGATGATTCACAGTGGAGACCCTG
TTAACTACTATGTCGACACAGCTGTGCGCCATGTGCTCCTCAGACAGGGTGTGCTGGGCATCAAAGTGAA
GATCATGCTGCCCTGGGACCCAAGTGGTAAGATTGGTCCCAAGAAGCCTCTGCCTGATCATGTGAGCATC
GTGGAACCTAAAGATGAAATCCTGCCCACGACCCCCATCTCCGAACAGAAGGGTGGGAAGCCAGAGCCAC
CAGCCATGCCCCAGCCAGTGCCTACAGCATAA

Translation (243 aa):
MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELT
AVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSG
KLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSI
VEPKDEILPTTPISEQKGGKPEPPAMPQPVPTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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