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Report for CCDS28733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28733.1 Public Mus musculus 17 Zfp57 23 108 98 CCDS HistoryNCBI Gene:22715Re-query CCDS DB by CCDS ID:28733.1Re-query CCDS DB by GeneID:22715See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069250.13 ENSMUSP00000065811.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069250.13Link to Ensembl Protein Viewer:ENSMUSP00000065811.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069250Re-query CCDS DB by Protein ID:ENSMUSP00000065811
Original member Current member EBI ENSMUST00000174672.1 ENSMUSP00000133821.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174672.1Link to Ensembl Protein Viewer:ENSMUSP00000133821.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174672Re-query CCDS DB by Protein ID:ENSMUSP00000133821
Original member Current member EBI ENSMUST00000174524.7 ENSMUSP00000134418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174524.7Link to Ensembl Protein Viewer:ENSMUSP00000134418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174524Re-query CCDS DB by Protein ID:ENSMUSP00000134418
Original member Current member NCBI NM_001013745.2 NP_001013767.1 Accepted alive Link to Nucleotide Sequence:NM_001013745.2Link to Protein Sequence:NP_001013767.1Re-query CCDS DB by Nucleotide ID:NM_001013745Re-query CCDS DB by Protein ID:NP_001013767Link to BLAST:NP_001013767.1
Original member Current member NCBI NM_001168501.1 NP_001161973.1 Accepted alive Link to Nucleotide Sequence:NM_001168501.1Link to Protein Sequence:NP_001161973.1Re-query CCDS DB by Nucleotide ID:NM_001168501Re-query CCDS DB by Protein ID:NP_001161973Link to BLAST:NP_001161973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013767.1 421 Q8C6P8-1 421 100% 0 0
NP_001161973.1 421 Q8C6P8-1 421 100% 0 0

Chromosomal Locations for CCDS 28733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37004886 37004903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37006050 37006194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37009419 37010521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCAGCTAGGAAACAGTCTTCCCAGCCATCCAGGACACCAGTCAGTTATGAGGACGTGGCAGTGTCTT
TCACCCAGGAAGAATGGGAATATCTTACTTCTACACAGAAGACCCTTTACCAGAAAGTGATGTCAGAAAC
CTTCAAGAACCTGACATTTGTCGGAAGCAAGAAGAAACCTCAAGAACCTAGCTCAGATCTGCAAGATAAG
AACGAGGAGCAGGAGAAGTCCTCCAGTTGCACAGGGGTATTCAAAGGTGGACCATTCTTTTTCTGTCTGA
CCTGTGGCAAATGTTTCAAAAAGAACACCTTCCTCTTTAATCACCAGTTTCCTGTGAGGTCCCGGAGGCT
GGCAGTCACAAATCCACAAAGCCGCAAAGGCAAGGGCTACAAGGCTCAGCATCGTGGAGAGAGGCCTTTC
TTTTGTAATTTCTGTGGCAAGACTTACCGTGATGCTTCTGGACTGAGCCGTCACCGACGTGCTCATTTAG
GTTATAGGCCCCGTTCATGCCCTGAGTGTGGAAAGTGTTTCCGGGATCAGTCTGAGGTCAACCGTCACCT
GAAGGTACACCAAAACAAGCCAGCAGCTAGCAACCAGGCTGGCAACCAGGCTAGCAACCAGAGGCTGAAG
AGTAGGGTTCCACCTACAACACCTAGATCCCAAGCGCCCGCCCTCAAGTATGTGAAAGTGATCCAGGGAC
CAGTGGCCAGGGCTAAGGCACGGAACAGCGGAGCCTCGACCCTGAATGTCAGATCCAACTCTATTACAGT
GGTCCGTTCAAGAGAAAAGATCTCTTGTCCCTATTGTCACATAACGTTTACCATGAGAACCTGTCTCTTA
ACCCACCTCAAGATCCACTTCAGACGTCAACCCAACCAGCACTTCTGCTGCAAAGAGTCGGCCCACTCAT
CCAACACACTCAGAATGCAAAAGATCTACACTTGCCCCGTCTGTGACAGCTCCTTTAGGGGAAAGGAGAG
CCTGCTGGATCACTTGTGCTGCCAAAGACCAATCAGATTCAGTAAATGCTGGGAAATCCTGGGTCATTTG
CTCGGCTATCTTCATGAACCCGTGGTGCTGGGAAATATTTTTAAAGTAAGGGACTCCTCGGGAAAGAGGA
TGGAATCCAGGAGGAGAAGACGGAAACGTGCCTGCACTGAGAATCCTGAAACAGAAGGCCTGTCTGGGAA
AGGTAGGGTGGCTCCGTGGGAAATGGAGGGTGCCACCAGCCCTGAGAGTCCTGTGACAGAAGAAGATTCG
GACTGA

Translation (421 aa):
MAARKQSSQPSRTPVSYEDVAVSFTQEEWEYLTSTQKTLYQKVMSETFKNLTFVGSKKKPQEPSSDLQDK
NEEQEKSSSCTGVFKGGPFFFCLTCGKCFKKNTFLFNHQFPVRSRRLAVTNPQSRKGKGYKAQHRGERPF
FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPAASNQAGNQASNQRLK
SRVPPTTPRSQAPALKYVKVIQGPVARAKARNSGASTLNVRSNSITVVRSREKISCPYCHITFTMRTCLL
THLKIHFRRQPNQHFCCKESAHSSNTLRMQKIYTCPVCDSSFRGKESLLDHLCCQRPIRFSKCWEILGHL
LGYLHEPVVLGNIFKVRDSSGKRMESRRRRRKRACTENPETEGLSGKGRVAPWEMEGATSPESPVTEEDS
D


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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